CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 4
extracellular 4
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70167	Canola	nucleus	73.45	23.06
CDX98826	Canola	nucleus	74.34	23.01
AT5G05230.1	Thale cress	nucleus	66.37	20.66
Solyc05g052220.2.1	Tomato	nucleus	50.44	13.67
PGSC0003DMT400030432	Potato	nucleus	49.56	13.24
KRH64207	Soybean	nucleus	49.56	13.15
KRH53725	Soybean	nucleus	49.56	13.08
VIT_13s0067g03030.t01	Wine grape	nucleus	47.79	12.24
CDY22467	Canola	mitochondrion	39.82	11.51
CDY42216	Canola	cytosol, mitochondrion, plastid	27.43	6.2
CDY33428	Canola	plastid	27.43	5.64
CDY60118	Canola	nucleus	12.39	3.02
CDY23555	Canola	nucleus	12.39	3.01
CDY69157	Canola	extracellular, golgi, vacuole	0.88	0.33

Protein Annotations

EnsemblPlants:CDX95798	EnsemblPlantsGene:GSBRNA2T00101738001	Gene3D:3.30.40.10	InterPro:IPR013083	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR33644
PANTHER:PTHR33644:SF3	ProteinID:CDX95798	ProteinID:CDX95798.1	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF57850
UniParc:UPI0004EE2A8E	MapMan:35.1	:	:	:	:

Description

BnaC05g35490D

Coordinates

chrLK031891:-:351226..352031

Molecular Weight (calculated)

13146.7 Da

IEP (calculated)

10.386

GRAVY (calculated)

-0.675

Length

113 amino acids

Sequence
(BLAST)

001: MRNTTCILIL WGTHLLSSFK QMKACCTCSQ PVSEDSITPN LTLRVAVQAF CREEKSHSNH SSKRKREGFD QERHTFGDTT YTNRSRNRTN HFPFVVADRV
101: IIKVNPRTPP RFY

Best Arabidopsis Sequence Match ( AT5G05230.1 )
(BLAST)

001: MSGKGLSPAP FNAQPMIVQD ADPLRFRVGE QDPKTREFAA FIGDHRYFAA AAAAAAAANP HPHLEFRQNF YSEKPIIGNP NDSGGSDGED DVDVEEEDED
101: DDLDGNEGDI GMNKDAGEDS VSAGAVIVVG QDNAAYYSQH FKTVEASFVS RNEESSIAAD NGCDFSGRRD LSSSSSNSIE SLRTILSDPT TGSLMADAMI
201: LPCGHTFGAG GIEQVKQMKA CCTCSQPVSE DSITPNLTLR VAVQAFCREE NSQSNHPSKR KREGFDQERR AFGVTNHSGR SRNKSNHFPF AVADRVIIKG
301: NKRTPPRFVG REAVVTTQCL NGWYVVKTLD NAESVKLQYR SLAKAPEDPS AKATPNKMVS NWL

Arabidopsis Description

PUB62U-box domain-containing protein 62 [Source:UniProtKB/Swiss-Prot;Acc:Q6DBN5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.