CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53725	Soybean	nucleus	86.62	86.22
CDX95798	Canola	extracellular	13.15	49.56
VIT_13s0067g03030.t01	Wine grape	nucleus	48.36	46.71
Solyc05g052220.2.1	Tomato	nucleus	45.54	46.52
CDX98826	Canola	nucleus	38.26	44.66
PGSC0003DMT400030432	Potato	nucleus	44.13	44.44
AT5G05230.1	Thale cress	nucleus	37.79	44.35
Bra009097.1-P	Field mustard	nucleus	37.09	43.89
CDX70167	Canola	nucleus	37.09	43.89
EER90651	Sorghum	nucleus, plastid	32.16	40.29
TraesCS5A01G469100.2	Wheat	nucleus	32.63	40.29
TraesCS5D01G481900.1	Wheat	nucleus	32.16	39.83
TraesCS5B01G481600.1	Wheat	nucleus	30.99	38.71
Zm00001d034607_P001	Maize	plastid	31.22	38.44
HORVU5Hr1G111680.4	Barley	plastid	33.1	37.3
GSMUA_Achr1P17210_001	Banana	nucleus	33.1	34.14
Os03t0816000-01	Rice	plastid	11.27	22.75
KRH29221	Soybean	nucleus	25.12	18.29
KRH24219	Soybean	nucleus	24.88	18.06
KRH13671	Soybean	cytosol	10.09	10.12
KRH43789	Soybean	nucleus	11.74	9.92

Protein Annotations

EntrezGene:100791099	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02002747	EnsemblPlantsGene:GLYMA_04G222600	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	UniProt:I1JYC0	InterPro:IPR003613	InterPro:IPR013083
EnsemblPlants:KRH64207	ProteinID:KRH64207	ProteinID:KRH64207.1	PFscan:PS51698	PANTHER:PTHR33644	PANTHER:PTHR33644:SF3
SUPFAM:SSF57850	UniParc:UPI000233A067	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:49314138..49319561

Molecular Weight (calculated)

46888.0 Da

IEP (calculated)

4.604

GRAVY (calculated)

-0.773

Length

426 amino acids

Sequence
(BLAST)

001: MSSEDITLVP DQRIENGLNS PLVFQDDPLR FNCPTPHQRR VGDPPPKTRE LGAFIDDNKM FIDRDRFFAA AQNPEFRRYA DCSARRDPPH ARNWSATDDD
101: EESDDDDEDD DDDEADDTEV GGLVGDGTKS ELNNNNNNNG GANLPAVANG KAHSYVSGRE LLVKDGGDIG QLVHSNVSGG DEDHRQEGLG KSQNSVTVAE
201: TDCEEYYSHY LHGGEGASGQ KVMVDDSGCG FSGRKDAMYS SESGESLRAI LSDPVTGALM DDAMILPCGH SFGGGGIEHA IRMKACCTCS QPTTEESISP
301: NLSLRIAVQA YRREEESQFY RSPKRRRERF DQGGFGDSVV MEPSRSRGVQ FPFAVMDRVI IKGNKRTPQR FVGREAIVTT QCLNGWYVVK TLDNAESVKL
401: QYRSLAKVMD DPSKPAASSK MPPNWL

Best Arabidopsis Sequence Match ( AT5G05230.1 )
(BLAST)

001: MSGKGLSPAP FNAQPMIVQD ADPLRFRVGE QDPKTREFAA FIGDHRYFAA AAAAAAAANP HPHLEFRQNF YSEKPIIGNP NDSGGSDGED DVDVEEEDED
101: DDLDGNEGDI GMNKDAGEDS VSAGAVIVVG QDNAAYYSQH FKTVEASFVS RNEESSIAAD NGCDFSGRRD LSSSSSNSIE SLRTILSDPT TGSLMADAMI
201: LPCGHTFGAG GIEQVKQMKA CCTCSQPVSE DSITPNLTLR VAVQAFCREE NSQSNHPSKR KREGFDQERR AFGVTNHSGR SRNKSNHFPF AVADRVIIKG
301: NKRTPPRFVG REAVVTTQCL NGWYVVKTLD NAESVKLQYR SLAKAPEDPS AKATPNKMVS NWL

Arabidopsis Description

PUB62U-box domain-containing protein 62 [Source:UniProtKB/Swiss-Prot;Acc:Q6DBN5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.