Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G481600.1 | Wheat | nucleus | 91.57 | 92.38 |
| TraesCS5A01G469100.2 | Wheat | nucleus | 77.62 | 77.39 |
| HORVU5Hr1G111680.4 | Barley | plastid | 79.94 | 72.75 |
| EER90651 | Sorghum | nucleus, plastid | 52.33 | 52.94 |
| Zm00001d034607_P001 | Maize | plastid | 50.87 | 50.58 |
| Os03t0816000-01 | Rice | plastid | 30.81 | 50.24 |
| GSMUA_Achr1P17210_001 | Banana | nucleus | 44.77 | 37.29 |
| PGSC0003DMT400030432 | Potato | nucleus | 41.86 | 34.04 |
| VIT_13s0067g03030.t01 | Wine grape | nucleus | 42.73 | 33.33 |
| Solyc05g052220.2.1 | Tomato | nucleus | 40.12 | 33.09 |
| Bra000197.1-P | Field mustard | nucleus | 32.85 | 33.04 |
| KRH53725 | Soybean | nucleus | 40.99 | 32.94 |
| KRH64207 | Soybean | nucleus | 39.83 | 32.16 |
| AT2G40640.1 | Thale cress | mitochondrion | 30.52 | 27.42 |
| CDY22467 | Canola | mitochondrion | 30.81 | 27.11 |
| TraesCS6D01G400800.1 | Wheat | cytosol, nucleus, plastid | 26.74 | 18.36 |
| CDY69157 | Canola | extracellular, golgi, vacuole | 10.17 | 11.71 |
| TraesCS2D01G235000.1 | Wheat | cytosol | 8.43 | 6.03 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G481900.1 | EnsemblPlantsGene:TraesCS5D01G481900 | Gene3D:3.30.40.10 | InterPro:IPR013083 | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil |
| PANTHER:PTHR33644 | PANTHER:PTHR33644:SF3 | SEG:seg | SUPFAM:SSF57850 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr5D:-:519646511..519649314
Molecular Weight (calculated)
37216.0 Da
IEP (calculated)
4.813
GRAVY (calculated)
-0.787
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPPGPGSA NRALSSSSRG PLSPFPGGAG PFLRHQPPPG GDSDGGASMD EFDEDDEDED EEEDDGEDQD AELAARSSQQ RRASSPAGIG RPVVNGENGT
101: RQIQEGQQWQ LYSCGTEQHG RSSSRGDEEP GSVPREMRVE DGYGVIGRRE GGPASSYWDL LRAHLSDPLT GILMDDAMIL SCGHSYGSSG MQHIYRMKAC
201: GKCGQPITED SIRPNLALGL AVQAFRREEE SAKTLKRRRD RIEQDKCGND DPNPAEVSRG KGVQYPFAVF DRVIIKGNKR TPERFVGRVA VVTAQCLNGW
301: YVVKTLDNAE SVKLQYRSLA KFVDGGSGEP PAVVSNSSQN TSWL
101: RQIQEGQQWQ LYSCGTEQHG RSSSRGDEEP GSVPREMRVE DGYGVIGRRE GGPASSYWDL LRAHLSDPLT GILMDDAMIL SCGHSYGSSG MQHIYRMKAC
201: GKCGQPITED SIRPNLALGL AVQAFRREEE SAKTLKRRRD RIEQDKCGND DPNPAEVSRG KGVQYPFAVF DRVIIKGNKR TPERFVGRVA VVTAQCLNGW
301: YVVKTLDNAE SVKLQYRSLA KFVDGGSGEP PAVVSNSSQN TSWL
001: MSGKGLSPAP FNAQPMIVQD ADPLRFRVGE QDPKTREFAA FIGDHRYFAA AAAAAAAANP HPHLEFRQNF YSEKPIIGNP NDSGGSDGED DVDVEEEDED
101: DDLDGNEGDI GMNKDAGEDS VSAGAVIVVG QDNAAYYSQH FKTVEASFVS RNEESSIAAD NGCDFSGRRD LSSSSSNSIE SLRTILSDPT TGSLMADAMI
201: LPCGHTFGAG GIEQVKQMKA CCTCSQPVSE DSITPNLTLR VAVQAFCREE NSQSNHPSKR KREGFDQERR AFGVTNHSGR SRNKSNHFPF AVADRVIIKG
301: NKRTPPRFVG REAVVTTQCL NGWYVVKTLD NAESVKLQYR SLAKAPEDPS AKATPNKMVS NWL
101: DDLDGNEGDI GMNKDAGEDS VSAGAVIVVG QDNAAYYSQH FKTVEASFVS RNEESSIAAD NGCDFSGRRD LSSSSSNSIE SLRTILSDPT TGSLMADAMI
201: LPCGHTFGAG GIEQVKQMKA CCTCSQPVSE DSITPNLTLR VAVQAFCREE NSQSNHPSKR KREGFDQERR AFGVTNHSGR SRNKSNHFPF AVADRVIIKG
301: NKRTPPRFVG REAVVTTQCL NGWYVVKTLD NAESVKLQYR SLAKAPEDPS AKATPNKMVS NWL
Arabidopsis Description
PUB62U-box domain-containing protein 62 [Source:UniProtKB/Swiss-Prot;Acc:Q6DBN5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.