Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000197.1-P | Field mustard | nucleus | 48.04 | 53.8 |
| CDY22467 | Canola | mitochondrion | 46.21 | 45.27 |
| AT5G05230.1 | Thale cress | nucleus | 32.38 | 34.16 |
| EER90651 | Sorghum | nucleus, plastid | 28.72 | 32.35 |
| TraesCS5A01G469100.2 | Wheat | nucleus | 27.94 | 31.01 |
| Zm00001d034607_P001 | Maize | plastid | 27.68 | 30.64 |
| TraesCS5D01G481900.1 | Wheat | nucleus | 27.42 | 30.52 |
| TraesCS5B01G481600.1 | Wheat | nucleus | 27.15 | 30.5 |
| HORVU5Hr1G111680.4 | Barley | plastid | 28.72 | 29.1 |
| GSMUA_Achr1P17210_001 | Banana | nucleus | 29.24 | 27.12 |
| CDY69157 | Canola | extracellular, golgi, vacuole | 15.93 | 20.4 |
| Os03t0816000-01 | Rice | plastid | 9.4 | 17.06 |
| AT3G19895.1 | Thale cress | plastid | 21.93 | 15.16 |
| AT3G12940.2 | Thale cress | nucleus | 11.75 | 9.18 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:818659 | ProteinID:AAM14813.1 | ProteinID:AEC09857.1 | ProteinID:AEC09858.1 |
| EMBL:AK175678 | EMBL:AK175724 | EMBL:AK175771 | EMBL:AK176741 | EMBL:AK227154 | ArrayExpress:AT2G40640 |
| EnsemblPlantsGene:AT2G40640 | RefSeq:AT2G40640 | TAIR:AT2G40640 | RefSeq:AT2G40640-TAIR-G | EnsemblPlants:AT2G40640.1 | TAIR:AT2G40640.1 |
| EMBL:AY168999 | EMBL:AY954825 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| InterPro:IPR003613 | InterPro:IPR013083 | RefSeq:NP_850332.1 | RefSeq:NP_850333.1 | PO:PO:0000005 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 |
| PFscan:PS51698 | PANTHER:PTHR33644 | PANTHER:PTHR33644:SF3 | UniProt:Q58FY4 | SUPFAM:SSF57850 | UniParc:UPI0000196E43 |
| InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | : | : | : | : |
Description
PUB63U-box domain-containing protein 63 [Source:UniProtKB/Swiss-Prot;Acc:Q58FY4]
Coordinates
chr2:-:16960964..16963215
Molecular Weight (calculated)
43304.1 Da
IEP (calculated)
7.805
GRAVY (calculated)
-0.651
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHLRRRRFK LSLCALPVSI DRLLNFPAEK QMSVNDSIDP RFVFHVEDES LRFRVGDSGT KIRELETVGD RHFRTQQGFC GNRIEKDETM YSDGDDEEYD
101: VSIRRRTALI QPGIDSGNNY DSAAAEETNR ESKNPVGWEL VVREDGEGNS TIDRHEMEFK VRITKPDGNV SNSHRNTQQK RDFASVEKER VTTTSVSSWE
201: SLKAILSDPV TGALMNDATI LPCGHSFGAG GLKEVKKMKA CFTCSQPTLE GSEKPNLSLR IVVHAFRQEE DSDHIHTLKR RKERSDQKRS FCIPNITETP
301: KSSRGIQFPF SIGDHIIIEG NKRTPPRFVG RIAVIMTQCL NGWYVVKTVD NSESIKLQHC SLAKISDNSS TKVTVAEMPP SWL
101: VSIRRRTALI QPGIDSGNNY DSAAAEETNR ESKNPVGWEL VVREDGEGNS TIDRHEMEFK VRITKPDGNV SNSHRNTQQK RDFASVEKER VTTTSVSSWE
201: SLKAILSDPV TGALMNDATI LPCGHSFGAG GLKEVKKMKA CFTCSQPTLE GSEKPNLSLR IVVHAFRQEE DSDHIHTLKR RKERSDQKRS FCIPNITETP
301: KSSRGIQFPF SIGDHIIIEG NKRTPPRFVG RIAVIMTQCL NGWYVVKTVD NSESIKLQHC SLAKISDNSS TKVTVAEMPP SWL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.