Factsheet for GSMUA_Achr1P17210_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G469100.2	Wheat	nucleus	37.53	44.93
TraesCS5B01G481600.1	Wheat	nucleus	37.05	44.87
TraesCS5D01G481900.1	Wheat	nucleus	37.29	44.77
EER90651	Sorghum	nucleus, plastid	35.84	43.53
HORVU5Hr1G111680.4	Barley	plastid	38.01	41.53
Zm00001d034607_P001	Maize	plastid	33.41	39.88
GSMUA_Achr4P11720_001	Banana	cytosol	16.46	38.42
Solyc05g052220.2.1	Tomato	nucleus	35.84	35.49
PGSC0003DMT400030432	Potato	nucleus	36.08	35.22
Bra000197.1-P	Field mustard	nucleus	28.57	34.5
VIT_13s0067g03030.t01	Wine grape	nucleus	36.8	34.47
KRH53725	Soybean	nucleus	35.11	33.88
KRH64207	Soybean	nucleus	34.14	33.1
CDY22467	Canola	mitochondrion	29.3	30.95
AT2G40640.1	Thale cress	mitochondrion	27.12	29.24
Os03t0816000-01	Rice	plastid	14.53	28.44
CDY69157	Canola	extracellular, golgi, vacuole	9.44	13.04
GSMUA_Achr11P...	Banana	cytosol, extracellular, peroxisome	11.62	10.15
GSMUA_Achr4P11710_001	Banana	plastid	9.69	10.13

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr1G17210_001	EnsemblPlants:GSMUA_Achr1P17210_001	EnsemblPlants:GSMUA_Achr1T17210_001	InterPro:IPR003613	InterPro:IPR013083	UniProt:M0S0M9
PFAM:PF04564	PANTHER:PTHR33644	PANTHER:PTHR33644:SF3	SUPFAM:SSF57850	UniParc:UPI00029633A7	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_67.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr1G17210_001]

Coordinates

chr1:+:12823331..12833326

Molecular Weight (calculated)

45493.5 Da

IEP (calculated)

4.919

GRAVY (calculated)

-0.762

Length

413 amino acids

Sequence
(BLAST)

001: MASENGIASG MVFQGESFPF SRGDGEPSGQ RTVRPAGFPG ADGDKIFSGE RDARFYRDLH RPPPPGQSWG GLVDGGSHSG DGPHGEDEED DEEDGDDDDE
101: DVDDGDGLVS LEEGNNKVNY NSSGSVQSSS EKICDERAIS QEHHSSFGSS RGVLLKDGLG GRGGLVEQQY QEGRMDGCEN AVVVMEPEPY FTHVLHGADE
201: SSHHKELRGE NGCGFNGRRE VGLAAGYWET LRTQLSDPIT GTLMDDAMIL SCGHSFGSSG MQHVYKMKAC YTCTQPISEY SVRPNLTLRA TVQAFRREDE
301: LHLFKATKRK RERFEQEKCN HNDSFSMDLS RGKGVQFPFA VSDKVIIKGN KRTPQRFVGR VAVVTTQCLN GWYVVKTLDN AESVKLQYRS LEKLVDDQGP
401: HIISDKAQTP NWL

Best Arabidopsis Sequence Match ( AT5G05230.1 )
(BLAST)

001: MSGKGLSPAP FNAQPMIVQD ADPLRFRVGE QDPKTREFAA FIGDHRYFAA AAAAAAAANP HPHLEFRQNF YSEKPIIGNP NDSGGSDGED DVDVEEEDED
101: DDLDGNEGDI GMNKDAGEDS VSAGAVIVVG QDNAAYYSQH FKTVEASFVS RNEESSIAAD NGCDFSGRRD LSSSSSNSIE SLRTILSDPT TGSLMADAMI
201: LPCGHTFGAG GIEQVKQMKA CCTCSQPVSE DSITPNLTLR VAVQAFCREE NSQSNHPSKR KREGFDQERR AFGVTNHSGR SRNKSNHFPF AVADRVIIKG
301: NKRTPPRFVG REAVVTTQCL NGWYVVKTLD NAESVKLQYR SLAKAPEDPS AKATPNKMVS NWL

Arabidopsis Description

PUB62U-box domain-containing protein 62 [Source:UniProtKB/Swiss-Prot;Acc:Q6DBN5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.