Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G481900.1 | Wheat | nucleus | 77.39 | 77.62 |
| TraesCS5B01G481600.1 | Wheat | nucleus | 76.23 | 77.13 |
| HORVU5Hr1G111680.4 | Barley | plastid | 76.81 | 70.11 |
| EER90651 | Sorghum | nucleus, plastid | 50.43 | 51.18 |
| Os03t0816000-01 | Rice | plastid | 29.86 | 48.82 |
| Zm00001d034607_P001 | Maize | plastid | 48.7 | 48.55 |
| GSMUA_Achr1P17210_001 | Banana | nucleus | 44.93 | 37.53 |
| PGSC0003DMT400030432 | Potato | nucleus | 42.03 | 34.28 |
| Solyc05g052220.2.1 | Tomato | nucleus | 40.87 | 33.81 |
| VIT_13s0067g03030.t01 | Wine grape | nucleus | 42.9 | 33.56 |
| Bra000197.1-P | Field mustard | nucleus | 32.75 | 33.04 |
| KRH64207 | Soybean | nucleus | 40.29 | 32.63 |
| KRH53725 | Soybean | nucleus | 39.71 | 32.01 |
| CDY22467 | Canola | mitochondrion | 31.88 | 28.13 |
| AT2G40640.1 | Thale cress | mitochondrion | 31.01 | 27.94 |
| TraesCS6A01G415200.1 | Wheat | cytosol, nucleus, plastid | 28.41 | 19.56 |
| CDY69157 | Canola | extracellular, golgi, vacuole | 8.99 | 10.37 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G469100.2 | EnsemblPlantsGene:TraesCS5A01G469100 | Gene3D:3.30.40.10 | InterPro:IPR013083 | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil |
| PANTHER:PTHR33644 | PANTHER:PTHR33644:SF3 | SEG:seg | SUPFAM:SSF57850 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr5A:-:646205766..646208648
Molecular Weight (calculated)
37440.3 Da
IEP (calculated)
4.961
GRAVY (calculated)
-0.743
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPPGPGSA NRALSSSSRG PLSPFPGAAR DAVPFLRHHH PPGGDSDGGA SMDEFDEDDD DDDDDEEEDQ DAELAARSSL QRRDSSPAGI GRPVTNGENG
101: VRQIQEGQQW QLYNHGTEQH GCASSRGDEE PGSVPREMRV EDGYGVIGRR EGGPASSYWD LLRAHLSDPL TGILMDDAMI LSCGHSYGSS GMQHIYRMKA
201: CGKCGQPITE DSIRPNLALG LAVQAFRREE ESAKTLKRRR DRIEQDKCGN DDLNPAELSR GKGVQYPFAV FDRVIIKGNK RTPERFVGRV AVVTAQCLNG
301: WYVVKTLDNA ESVKLQYRSL AKFVDGGGGE PPVVASNSSQ NASWL
101: VRQIQEGQQW QLYNHGTEQH GCASSRGDEE PGSVPREMRV EDGYGVIGRR EGGPASSYWD LLRAHLSDPL TGILMDDAMI LSCGHSYGSS GMQHIYRMKA
201: CGKCGQPITE DSIRPNLALG LAVQAFRREE ESAKTLKRRR DRIEQDKCGN DDLNPAELSR GKGVQYPFAV FDRVIIKGNK RTPERFVGRV AVVTAQCLNG
301: WYVVKTLDNA ESVKLQYRSL AKFVDGGGGE PPVVASNSSQ NASWL
001: MSGKGLSPAP FNAQPMIVQD ADPLRFRVGE QDPKTREFAA FIGDHRYFAA AAAAAAAANP HPHLEFRQNF YSEKPIIGNP NDSGGSDGED DVDVEEEDED
101: DDLDGNEGDI GMNKDAGEDS VSAGAVIVVG QDNAAYYSQH FKTVEASFVS RNEESSIAAD NGCDFSGRRD LSSSSSNSIE SLRTILSDPT TGSLMADAMI
201: LPCGHTFGAG GIEQVKQMKA CCTCSQPVSE DSITPNLTLR VAVQAFCREE NSQSNHPSKR KREGFDQERR AFGVTNHSGR SRNKSNHFPF AVADRVIIKG
301: NKRTPPRFVG REAVVTTQCL NGWYVVKTLD NAESVKLQYR SLAKAPEDPS AKATPNKMVS NWL
101: DDLDGNEGDI GMNKDAGEDS VSAGAVIVVG QDNAAYYSQH FKTVEASFVS RNEESSIAAD NGCDFSGRRD LSSSSSNSIE SLRTILSDPT TGSLMADAMI
201: LPCGHTFGAG GIEQVKQMKA CCTCSQPVSE DSITPNLTLR VAVQAFCREE NSQSNHPSKR KREGFDQERR AFGVTNHSGR SRNKSNHFPF AVADRVIIKG
301: NKRTPPRFVG REAVVTTQCL NGWYVVKTLD NAESVKLQYR SLAKAPEDPS AKATPNKMVS NWL
Arabidopsis Description
PUB62U-box domain-containing protein 62 [Source:UniProtKB/Swiss-Prot;Acc:Q6DBN5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.