CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64207	Soybean	nucleus	86.22	86.62
CDX95798	Canola	extracellular	13.08	49.56
VIT_13s0067g03030.t01	Wine grape	nucleus	48.6	47.17
Solyc05g052220.2.1	Tomato	nucleus	44.86	46.04
AT5G05230.1	Thale cress	nucleus	38.55	45.45
PGSC0003DMT400030432	Potato	nucleus	43.93	44.44
CDX98826	Canola	nucleus	37.15	43.56
Bra009097.1-P	Field mustard	nucleus	36.45	43.33
CDX70167	Canola	nucleus	36.45	43.33
TraesCS5D01G481900.1	Wheat	nucleus	32.94	40.99
TraesCS5A01G469100.2	Wheat	nucleus	32.01	39.71
EER90651	Sorghum	nucleus, plastid	31.54	39.71
TraesCS5B01G481600.1	Wheat	nucleus	31.54	39.59
HORVU5Hr1G111680.4	Barley	plastid	33.64	38.1
Zm00001d034607_P001	Maize	plastid	30.61	37.86
GSMUA_Achr1P17210_001	Banana	nucleus	33.88	35.11
Os03t0816000-01	Rice	plastid	11.45	23.22
KRH29221	Soybean	nucleus	25.23	18.46
KRH24219	Soybean	nucleus	24.77	18.06
KRH13671	Soybean	cytosol	10.05	10.12
KRH43789	Soybean	nucleus	11.68	9.92

Protein Annotations

EntrezGene:100786717	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02003480	EnsemblPlantsGene:GLYMA_06G142700	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR013083	UniProt:K7KV13
EnsemblPlants:KRH53725	ProteinID:KRH53725	ProteinID:KRH53725.1	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR33644
PANTHER:PTHR33644:SF3	SUPFAM:SSF57850	UniParc:UPI000233978E	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:11625146..11630800

Molecular Weight (calculated)

47027.3 Da

IEP (calculated)

4.675

GRAVY (calculated)

-0.749

Length

428 amino acids

Sequence
(BLAST)

001: MSSEDITLVP DQRIENGLNS PLVFQDDPLR FNCPTPHHRR VGDPPPKTRE LGSFIDDNKM FIDRDRFFAA AHNPEFRRYA DCSARRDPRN WNTNGSATED
101: DDSDDDDEDD DDDEEDDTEV EGLVGDGTKS ELKINNNNGA GGGGNLPAVA NGKAHSYVAG RQLLVKDGGD IGQLVHSNVS GGDEDHRQEG LGKSQNSVTV
201: AETDCEEYYS HFLQGGEGAS GQKVMVDDSG CGFSGRKDAM YSSESGESLR AILSDPVTGA LMDDAVILPC GHSFGGGGIQ HVIRMKACCT CSQPTTEESI
301: SPNLSLRIAV QAYRREEESQ FYRSPKRRRE RFDQGGFGDS VVMEPSRSRG VQFPFAVMDR VIIKGNKRTP QRFVGREAIV TTQCLNGWYV VKTLDNAESV
401: KLQYRSLAKV MDDPSKPAAS SKMPPNWL

Best Arabidopsis Sequence Match ( AT5G05230.1 )
(BLAST)

001: MSGKGLSPAP FNAQPMIVQD ADPLRFRVGE QDPKTREFAA FIGDHRYFAA AAAAAAAANP HPHLEFRQNF YSEKPIIGNP NDSGGSDGED DVDVEEEDED
101: DDLDGNEGDI GMNKDAGEDS VSAGAVIVVG QDNAAYYSQH FKTVEASFVS RNEESSIAAD NGCDFSGRRD LSSSSSNSIE SLRTILSDPT TGSLMADAMI
201: LPCGHTFGAG GIEQVKQMKA CCTCSQPVSE DSITPNLTLR VAVQAFCREE NSQSNHPSKR KREGFDQERR AFGVTNHSGR SRNKSNHFPF AVADRVIIKG
301: NKRTPPRFVG REAVVTTQCL NGWYVVKTLD NAESVKLQYR SLAKAPEDPS AKATPNKMVS NWL

Arabidopsis Description

PUB62U-box domain-containing protein 62 [Source:UniProtKB/Swiss-Prot;Acc:Q6DBN5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.