CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29221	Soybean	nucleus	87.39	87.69
VIT_01s0010g01230.t01	Wine grape	plastid	69.85	69.37
CDY42216	Canola	cytosol, mitochondrion, plastid	57.41	67.4
PGSC0003DMT400082437	Potato	plastid	63.54	66.73
Solyc04g009340.2.1	Tomato	nucleus	63.54	66.37
GSMUA_Achr4P11720_001	Banana	cytosol	19.42	64.41
Bra038238.1-P	Field mustard	plastid	58.43	62.14
AT3G19895.1	Thale cress	plastid	58.26	61.73
CDY33428	Canola	plastid	57.41	61.27
TraesCS7B01G331900.1	Wheat	cytosol	29.81	55.91
EES07813	Sorghum	plastid	47.02	55.65
TraesCS6A01G415200.1	Wheat	cytosol, nucleus, plastid	47.19	55.29
TraesCS6D01G400800.1	Wheat	cytosol, nucleus, plastid	47.02	55.09
GSMUA_Achr4P11710_001	Banana	plastid	36.46	54.18
Os02t0829600-01	Rice	plastid	47.53	53.45
HORVU6Hr1G094240.3	Barley	nucleus, plastid	47.19	52.17
Zm00001d018533_P003	Maize	plastid	45.83	51.43
KRH13671	Soybean	cytosol	19.42	26.82
KRH64207	Soybean	nucleus	18.06	24.88
KRH53725	Soybean	nucleus	18.06	24.77
KRH43789	Soybean	nucleus	20.27	23.61

Protein Annotations

EMBL:ACUP02007172	EnsemblPlants:KRH24219	EnsemblPlantsGene:GLYMA_12G028900	EntrezGene:100807199	Gene3D:2.60.120.330	Gene3D:3.30.40.10
InterPro:IPNS-like	InterPro:IPR013083	InterPro:IPR027443	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR33644	PANTHER:PTHR33644:SF1
ProteinID:KRH24219	ProteinID:KRH24219.1	SEG:seg	SUPFAM:SSF51197	SUPFAM:SSF57850	SUPFAM:SSF81995
UniParc:UPI0002967B1C	UniProt:K7LSS1	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:2155156..2165019

Molecular Weight (calculated)

63244.6 Da

IEP (calculated)

8.628

GRAVY (calculated)

-0.249

Length

587 amino acids

Sequence
(BLAST)

001: MVAIMQQQQQ QQQQQQNPSA LVPFQLKNPQ SSTTTTAAAT PLRSPSAQSQ LSSPLSVVPP LRQSPLSSHP VPVTSVEPAL TAVPTCPLVR VRLSDIAPYE
101: GAPAGPYLRA MEALCGSLLR HNAALIELGN EDTALMRCGL EGARLFFRSR AHLGSGKGSR GVYMYRAGRA LEDWDSSPPC MADIFKCMGK ASRSALSAIA
201: RHLRLRSDVF NHLLDDAPLP ANEVSSSVLV VTYSHASLQN GRGAIGGGKP PMNGEVEKGL LTLISSDTPG LQVCDPSGRW YLADSGSVPG DLLLITGKAL
301: THATAGLCPA ASYRASPDYF LSPNGGGRTS LAYRLMPQGN AILDCSPIAA AGHVIPQSYV RISVSQFMDD LAAEELIGSR CDNADAAAQN NVNKEPSLRS
401: VLSDPLSGTF LEDAMLVSCG HSFGGLMLRR VIETSRCTLC NAEIETGSLI PNHALRAAAA AVKHEDDRRL FRNAALRKRR KEMGDQMDSM RRVNRENGDF
501: NATDGLQRGV QYPFSVNEKV VIKGNRRTPE KFVGKEAVIT SQCLNGWYLL KIIETGENVR LQYRSLRKIL NSPADQCPSQ PIQNSSS

Best Arabidopsis Sequence Match ( AT3G19895.1 )
(BLAST)

001: MHRQGSSPIT PSNYNAAVSI ASDVPTGLTK SPLSHAIPVS PISAAYPSGD PILMMSGTPL ARVRLSEILP YEGAPSPVYA KAVEALSVSL MRYNASVIEI
101: GSEDTALMRC GLEAARLYFR TRSLTVSGKG NRGLSMYRAG RSVEDLDSSP PCMAEIFRCL GKVARAALSA IARHLRLRSD VFNHMLDDFP LAPNEVSSSV
201: LLASYAHASI QNGKHASGGG NLSAKIEVEK GLLTLFCSDG TGIQVCDPNG RWYTADNGCG VGDLLLITGK ALSHATAGLR PAASYRTTTD HLSATDTRGR
301: ASLAFRLMPK SNAILDCSPI EAAGHVIPQS YVPVSVSQFM DNLLAENDTL VNPPVKTNVP RDDVCKEPSL RSVLSDPISG AFLEDAMVVS CGHSFGGLML
401: RRVLEMSRCT LCNTEIESGS LVPNHALRAA ASAIKQQDDK RLFHNAAMRR RRKEMSDQMD VENGDPATDD GMHRVVHYPF AVNEKVLIKG NRRTPEKFVG
501: KEAIVTSQCL NGWYLLKIVE SGDNVRLQYR SLKKMVNDDR GGGLQAQPVE SNSL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GWB1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.