Factsheet for TraesCS6D01G400800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G172000.1
TraesCS3B01G202800.2
TraesCS3D01G178500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19895.1	TraesCS3A01G172000.1	AT4G02150.1	21798944
AT3G19895.1	TraesCS3B01G202800.2	AT4G02150.1	21798944
AT3G19895.1	TraesCS3D01G178500.1	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G415200.1	Wheat	cytosol, nucleus, plastid	96.81	96.81
TraesCS7B01G331900.1	Wheat	cytosol	60.28	96.49
HORVU6Hr1G094240.3	Barley	nucleus, plastid	95.01	89.64
EES07813	Sorghum	plastid	73.85	74.6
Os02t0829600-01	Rice	plastid	75.25	72.22
Zm00001d018533_P003	Maize	plastid	72.85	69.79
GSMUA_Achr4P11720_001	Banana	cytosol	22.75	64.41
CDY42216	Canola	cytosol, mitochondrion, plastid	52.3	52.4
PGSC0003DMT400082437	Potato	plastid	56.09	50.27
Solyc04g009340.2.1	Tomato	nucleus	56.29	50.18
VIT_01s0010g01230.t01	Wine grape	plastid	58.88	49.92
AT3G19895.1	Thale cress	plastid	53.09	48.01
CDY33428	Canola	plastid	52.3	47.64
KRH29221	Soybean	nucleus	55.49	47.52
Bra038238.1-P	Field mustard	plastid	52.3	47.46
KRH24219	Soybean	nucleus	55.09	47.02
GSMUA_Achr4P11710_001	Banana	plastid	36.33	46.08
TraesCS5D01G481900.1	Wheat	nucleus	18.36	26.74
TraesCS2D01G235000.1	Wheat	cytosol	22.95	23.91

Protein Annotations

EnsemblPlants:TraesCS6D01G400800.1	EnsemblPlantsGene:TraesCS6D01G400800	Gene3D:2.60.120.330	Gene3D:3.30.40.10	InterPro:IPNS-like	InterPro:IPR013083
InterPro:IPR027443	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR33644	PANTHER:PTHR33644:SF1	SEG:seg	SUPFAM:SSF51197
SUPFAM:SSF57850	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:470320093..470323936

Molecular Weight (calculated)

54248.1 Da

IEP (calculated)

7.626

GRAVY (calculated)

-0.093

Length

501 amino acids

Sequence
(BLAST)

001: MACPPCPPSP LARVRLDDVA PHDGAAAPGY ARAVGALAAS LARRGAAVVE LPAADAAVVR CALESARAFF RGRHAAYLYR AGRNLEDGEL SPACMADAFR
101: CLGKAARAAL CAIARHLRLR TDVFNQLLDD TPLPVNEVSS SELLVAYTHE QLQSGQTLMG CPSRSSMPQV DRGFVTLVAS DYPGIEVCDP NGHWYLADGV
201: SGPNNLLLLT GRALSHVTAG LCPISQYRVT NENRASLTFR LVPHANAILD CSPILAAGHC IRQVYQPIPA SQFMDDSYAE EHAVSSHLEE PSESQGNFVS
301: DPSLRSVLSD PLSGAFLEDA MVLQCGHSFG GVMLKKVIEM ARCTICNGEV DPSSLFPNLA LRAVATVVKM EDDRRLFHNA ALRKRRKDVT EHTDVPKRTG
401: SSKANSEFAL DAESPVAFKG VQYPFVVGER VLIMGNKRTP EKFVGKEAVI TLQCLNGWYL VKALDSGEST RLQYRSLKKV PELQLQTQAR LQPLAFLGGR
501: Q

Best Arabidopsis Sequence Match ( AT3G19895.1 )
(BLAST)

001: MHRQGSSPIT PSNYNAAVSI ASDVPTGLTK SPLSHAIPVS PISAAYPSGD PILMMSGTPL ARVRLSEILP YEGAPSPVYA KAVEALSVSL MRYNASVIEI
101: GSEDTALMRC GLEAARLYFR TRSLTVSGKG NRGLSMYRAG RSVEDLDSSP PCMAEIFRCL GKVARAALSA IARHLRLRSD VFNHMLDDFP LAPNEVSSSV
201: LLASYAHASI QNGKHASGGG NLSAKIEVEK GLLTLFCSDG TGIQVCDPNG RWYTADNGCG VGDLLLITGK ALSHATAGLR PAASYRTTTD HLSATDTRGR
301: ASLAFRLMPK SNAILDCSPI EAAGHVIPQS YVPVSVSQFM DNLLAENDTL VNPPVKTNVP RDDVCKEPSL RSVLSDPISG AFLEDAMVVS CGHSFGGLML
401: RRVLEMSRCT LCNTEIESGS LVPNHALRAA ASAIKQQDDK RLFHNAAMRR RRKEMSDQMD VENGDPATDD GMHRVVHYPF AVNEKVLIKG NRRTPEKFVG
501: KEAIVTSQCL NGWYLLKIVE SGDNVRLQYR SLKKMVNDDR GGGLQAQPVE SNSL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GWB1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.