Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G034750.5 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G19895.1 | HORVU3Hr1G034750.5 | AT4G02150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G331900.1 | Wheat | cytosol | 56.12 | 95.21 |
| TraesCS6D01G400800.1 | Wheat | cytosol, nucleus, plastid | 89.64 | 95.01 |
| TraesCS6A01G415200.1 | Wheat | cytosol, nucleus, plastid | 89.08 | 94.41 |
| EES07813 | Sorghum | plastid | 69.68 | 74.6 |
| Os02t0829600-01 | Rice | plastid | 72.32 | 73.56 |
| Zm00001d018533_P003 | Maize | plastid | 69.3 | 70.36 |
| GSMUA_Achr4P11720_001 | Banana | cytosol | 21.66 | 64.97 |
| CDY42216 | Canola | cytosol, mitochondrion, plastid | 49.34 | 52.4 |
| PGSC0003DMT400082437 | Potato | plastid | 53.67 | 50.98 |
| Solyc04g009340.2.1 | Tomato | nucleus | 53.67 | 50.71 |
| VIT_01s0010g01230.t01 | Wine grape | plastid | 56.12 | 50.42 |
| AT3G19895.1 | Thale cress | plastid | 49.91 | 47.83 |
| Bra038238.1-P | Field mustard | plastid | 49.53 | 47.64 |
| CDY33428 | Canola | plastid | 49.34 | 47.64 |
| KRH29221 | Soybean | nucleus | 52.35 | 47.52 |
| KRH24219 | Soybean | nucleus | 52.17 | 47.19 |
| GSMUA_Achr4P11710_001 | Banana | plastid | 33.71 | 45.32 |
| HORVU5Hr1G111680.4 | Barley | plastid | 18.27 | 25.66 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G094240.3 | EnsemblPlantsGene:HORVU6Hr1G094240 | Gene3D:2.60.120.330 | Gene3D:3.30.40.10 | InterPro:IPNS-like | InterPro:IPR013083 |
| InterPro:IPR027443 | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR33644 | PANTHER:PTHR33644:SF1 | SEG:seg | SUPFAM:SSF51197 |
| SUPFAM:SSF57850 | UniParc:UPI000B4692A1 | UniProt:A0A287V9A0 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chrchr6H:-:580849203..580853341
Molecular Weight (calculated)
54694.7 Da
IEP (calculated)
7.773
GRAVY (calculated)
-0.102
Length
531 amino acids
Sequence
(BLAST)
(BLAST)
001: XXXXXXXXXX XXXXXXXXXX XXXXPPPPRP AMASPPCPPS PLARVRLDDV APHDGAAAPG YARAVAALAA SLARRGAAVL ELPAADAAVV RCALESARAF
101: FRGRHAAYLY RAGRTLEDGE LSPACMADAF RCLGKAARAA LCAIARHLRL RTDVFNQLLD DTPLPVNEIS SSELLVSYSH EQLQSGQALM GCPSRSSMPQ
201: VDRGFVMLVA SDCPGIEVCD PNGHWYIADG VSGPNNLLLL TGRALNHVTA GLCPISHYRV TNENRASLTF RLVPHANAIL DCSPILAAGH CIRQVYQPIP
301: ASQFMDDSCA EEHAVSSHLD EPSESQGNFV SDPSLRSVLS DPLSGSFLED AMVLQCGHSF GGLMLKKVIE MARCTICNGE VDPSSLFPNL ALRAVATVVK
401: MEDDRRLFHN AALRKRRKDV TEHTDVPKRT GSSKDNNELA LDAGSPVAFK GVQYPFVVGE RVLIMGNKRT PDKFVGKEAV ITSQCLNGWY LVKALDSGES
501: TRLQYRSLKK VSELQLQTQA RLQPLAFLGG R
101: FRGRHAAYLY RAGRTLEDGE LSPACMADAF RCLGKAARAA LCAIARHLRL RTDVFNQLLD DTPLPVNEIS SSELLVSYSH EQLQSGQALM GCPSRSSMPQ
201: VDRGFVMLVA SDCPGIEVCD PNGHWYIADG VSGPNNLLLL TGRALNHVTA GLCPISHYRV TNENRASLTF RLVPHANAIL DCSPILAAGH CIRQVYQPIP
301: ASQFMDDSCA EEHAVSSHLD EPSESQGNFV SDPSLRSVLS DPLSGSFLED AMVLQCGHSF GGLMLKKVIE MARCTICNGE VDPSSLFPNL ALRAVATVVK
401: MEDDRRLFHN AALRKRRKDV TEHTDVPKRT GSSKDNNELA LDAGSPVAFK GVQYPFVVGE RVLIMGNKRT PDKFVGKEAV ITSQCLNGWY LVKALDSGES
501: TRLQYRSLKK VSELQLQTQA RLQPLAFLGG R
001: MHRQGSSPIT PSNYNAAVSI ASDVPTGLTK SPLSHAIPVS PISAAYPSGD PILMMSGTPL ARVRLSEILP YEGAPSPVYA KAVEALSVSL MRYNASVIEI
101: GSEDTALMRC GLEAARLYFR TRSLTVSGKG NRGLSMYRAG RSVEDLDSSP PCMAEIFRCL GKVARAALSA IARHLRLRSD VFNHMLDDFP LAPNEVSSSV
201: LLASYAHASI QNGKHASGGG NLSAKIEVEK GLLTLFCSDG TGIQVCDPNG RWYTADNGCG VGDLLLITGK ALSHATAGLR PAASYRTTTD HLSATDTRGR
301: ASLAFRLMPK SNAILDCSPI EAAGHVIPQS YVPVSVSQFM DNLLAENDTL VNPPVKTNVP RDDVCKEPSL RSVLSDPISG AFLEDAMVVS CGHSFGGLML
401: RRVLEMSRCT LCNTEIESGS LVPNHALRAA ASAIKQQDDK RLFHNAAMRR RRKEMSDQMD VENGDPATDD GMHRVVHYPF AVNEKVLIKG NRRTPEKFVG
501: KEAIVTSQCL NGWYLLKIVE SGDNVRLQYR SLKKMVNDDR GGGLQAQPVE SNSL
101: GSEDTALMRC GLEAARLYFR TRSLTVSGKG NRGLSMYRAG RSVEDLDSSP PCMAEIFRCL GKVARAALSA IARHLRLRSD VFNHMLDDFP LAPNEVSSSV
201: LLASYAHASI QNGKHASGGG NLSAKIEVEK GLLTLFCSDG TGIQVCDPNG RWYTADNGCG VGDLLLITGK ALSHATAGLR PAASYRTTTD HLSATDTRGR
301: ASLAFRLMPK SNAILDCSPI EAAGHVIPQS YVPVSVSQFM DNLLAENDTL VNPPVKTNVP RDDVCKEPSL RSVLSDPISG AFLEDAMVVS CGHSFGGLML
401: RRVLEMSRCT LCNTEIESGS LVPNHALRAA ASAIKQQDDK RLFHNAAMRR RRKEMSDQMD VENGDPATDD GMHRVVHYPF AVNEKVLIKG NRRTPEKFVG
501: KEAIVTSQCL NGWYLLKIVE SGDNVRLQYR SLKKMVNDDR GGGLQAQPVE SNSL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GWB1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.