CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG32187

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19895.1	KXG32187	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018533_P003	Maize	plastid	90.52	85.85
TraesCS6D01G400800.1	Wheat	cytosol, nucleus, plastid	74.6	73.85
TraesCS6A01G415200.1	Wheat	cytosol, nucleus, plastid	74.19	73.45
TraesCS7B01G331900.1	Wheat	cytosol	45.36	71.89
HORVU6Hr1G094240.3	Barley	nucleus, plastid	74.6	69.68
Os02t0829600-01	Rice	plastid	71.37	67.82
GSMUA_Achr4P11720_001	Banana	cytosol	21.57	60.45
CDY42216	Canola	cytosol, mitochondrion, plastid	52.22	51.8
VIT_01s0010g01230.t01	Wine grape	plastid	59.07	49.58
PGSC0003DMT400082437	Potato	plastid	55.85	49.55
Solyc04g009340.2.1	Tomato	nucleus	56.05	49.47
AT3G19895.1	Thale cress	plastid	53.23	47.65
KRH29221	Soybean	nucleus	55.85	47.35
CDY33428	Canola	plastid	52.42	47.27
KRH24219	Soybean	nucleus	55.65	47.02
Bra038238.1-P	Field mustard	plastid	52.22	46.92
GSMUA_Achr4P11710_001	Banana	plastid	36.09	45.32
EER90651	Sorghum	nucleus, plastid	21.17	30.88
OQU89978	Sorghum	cytosol, nucleus, peroxisome	22.78	23.89

Protein Annotations

EnsemblPlants:EES07813	EnsemblPlantsGene:SORBI_3004G356200	EntrezGene:8056253	Gene3D:2.60.120.330	Gene3D:3.30.40.10	InterPro:IPNS-like
InterPro:IPR013083	InterPro:IPR027443	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR33644	PANTHER:PTHR33644:SF1	ProteinID:EES07813
ProteinID:EES07813.1	RefSeq:XP_002454837.1	SEG:seg	SUPFAM:SSF51197	SUPFAM:SSF57850	unigene:Sbi.20241
UniParc:UPI0001A861B4	UniProt:C5XWQ5	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:68354234..68358559

Molecular Weight (calculated)

53713.1 Da

IEP (calculated)

7.734

GRAVY (calculated)

-0.148

Length

496 amino acids

Sequence
(BLAST)

001: MSTFPPPPTA ARSPLARVRL DDLAPFDGAS TPAYARAVEA IAASLTRHGA AAVDLPAADA AVVRCALESA RAFFRARPGL YVYRAGRALD DGELSPACMA
101: DAFRCLGKAA RAALCAIARN LRLRSDAFSH LLDDNPLPLD EVSASELTVS FSHGHPQSSQ APMVGLRSSM AEVDRGFVTL VASDHPGIEV CNPNGHWYPA
201: DAGSSPDVLL LLTGRALSHV TAGLQLNSQY RITNNENRAS LMFRLMPRVN AILDCSPISA AGHCIPQIHR PISASQFMDD LRAEENVYHH SEAPLESQGN
301: FVNEPSLRSV LSDPLSGAFL EDAMVLSCGH SFGGLMLKKV LETARCSICN GEVDEASLFP NLALRAVATV VKMEDDRRLF HNAALRKRRK EVTEHMDAQR
401: RSGSSKDSIE LGLDAESPRA FKGVQYPFVA GERVVIMGNK RTPDKFVGKE AVVTSQCLNG WYLVKAVDSG ESIRLQYRSL RKAGELKVQA LLQSRQ

Best Arabidopsis Sequence Match ( AT3G19895.1 )
(BLAST)

001: MHRQGSSPIT PSNYNAAVSI ASDVPTGLTK SPLSHAIPVS PISAAYPSGD PILMMSGTPL ARVRLSEILP YEGAPSPVYA KAVEALSVSL MRYNASVIEI
101: GSEDTALMRC GLEAARLYFR TRSLTVSGKG NRGLSMYRAG RSVEDLDSSP PCMAEIFRCL GKVARAALSA IARHLRLRSD VFNHMLDDFP LAPNEVSSSV
201: LLASYAHASI QNGKHASGGG NLSAKIEVEK GLLTLFCSDG TGIQVCDPNG RWYTADNGCG VGDLLLITGK ALSHATAGLR PAASYRTTTD HLSATDTRGR
301: ASLAFRLMPK SNAILDCSPI EAAGHVIPQS YVPVSVSQFM DNLLAENDTL VNPPVKTNVP RDDVCKEPSL RSVLSDPISG AFLEDAMVVS CGHSFGGLML
401: RRVLEMSRCT LCNTEIESGS LVPNHALRAA ASAIKQQDDK RLFHNAAMRR RRKEMSDQMD VENGDPATDD GMHRVVHYPF AVNEKVLIKG NRRTPEKFVG
501: KEAIVTSQCL NGWYLLKIVE SGDNVRLQYR SLKKMVNDDR GGGLQAQPVE SNSL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GWB1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.