Factsheet for GSMUA_Achr4P11710_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G331900.1	Wheat	cytosol	45.82	57.83
VIT_01s0010g01230.t01	Wine grape	plastid	60.51	40.44
Solyc04g009340.2.1	Tomato	nucleus	57.22	40.21
PGSC0003DMT400082437	Potato	plastid	56.71	40.07
CDY42216	Canola	cytosol, mitochondrion, plastid	49.87	39.4
AT3G19895.1	Thale cress	plastid	51.65	36.82
CDY33428	Canola	plastid	50.89	36.55
KRH24219	Soybean	nucleus	54.18	36.46
KRH29221	Soybean	nucleus	53.92	36.41
TraesCS6D01G400800.1	Wheat	cytosol, nucleus, plastid	46.08	36.33
Bra038238.1-P	Field mustard	plastid	50.63	36.23
Os02t0829600-01	Rice	plastid	47.85	36.21
EES07813	Sorghum	plastid	45.32	36.09
TraesCS6A01G415200.1	Wheat	cytosol, nucleus, plastid	45.57	35.93
Zm00001d018533_P003	Maize	plastid	45.57	34.42
HORVU6Hr1G094240.3	Barley	nucleus, plastid	45.32	33.71
GSMUA_Achr11P...	Banana	cytosol, extracellular, peroxisome	26.84	22.41
GSMUA_Achr1P17210_001	Banana	nucleus	10.13	9.69
GSMUA_Achr4P11720_001	Banana	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr4P11710_001	EnsemblPlants:GSMUA_Achr4T11710_001	EnsemblPlantsGene:GSMUA_Achr4G11710_001	Gene3D:2.60.120.330	InterPro:IPNS-like	InterPro:IPR027443
PANTHER:PTHR33644	PANTHER:PTHR33644:SF1	SEG:seg	SUPFAM:SSF51197	UniParc:UPI000296CBFD	UniProt:M0SN36
MapMan:35.2	:	:	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G11710_001]

Coordinates

chr4:+:8511438..8517929

Molecular Weight (calculated)

41271.4 Da

IEP (calculated)

6.689

GRAVY (calculated)

-0.054

Length

395 amino acids

Sequence
(BLAST)

001: MAPAAPPQQP PPTLPSAVSR SPPAHPQSHP PSALSLGLLP LPLPLPLLPA PVTRHPAGSD SVEHVAPPVA KVKLADIVPY EGAPGGVYSK AVEELSGSLM
101: RHNAVVIELG SEEAVVVKCA LESARMCFKA RAQCNGAGSG VSGWGKLGRG VYTYRAGRAL EDGDLSPACM GDAFRCMGKA ARASLCAIAR HLRLRSDVFN
201: HLLDDTPLPA NEVSSSVLIA ACSHASHTNN SKGQIGGKSS ITEVEKGLLT LIASDSPGIQ VCDPNGHWFL ADGGSGPGDL LLLTGRALSH ATAGLRPAAS
301: YRMIVECFPG TVTRGRVSLT FKLMPQSNAI LDCSPIAVAG HVAPQSYQPI SVSQFMDDLS AEEDAMCNHP DNIYETQNDP MKEPSLRSIL SDPLS

Best Arabidopsis Sequence Match ( AT3G19895.1 )
(BLAST)

001: MHRQGSSPIT PSNYNAAVSI ASDVPTGLTK SPLSHAIPVS PISAAYPSGD PILMMSGTPL ARVRLSEILP YEGAPSPVYA KAVEALSVSL MRYNASVIEI
101: GSEDTALMRC GLEAARLYFR TRSLTVSGKG NRGLSMYRAG RSVEDLDSSP PCMAEIFRCL GKVARAALSA IARHLRLRSD VFNHMLDDFP LAPNEVSSSV
201: LLASYAHASI QNGKHASGGG NLSAKIEVEK GLLTLFCSDG TGIQVCDPNG RWYTADNGCG VGDLLLITGK ALSHATAGLR PAASYRTTTD HLSATDTRGR
301: ASLAFRLMPK SNAILDCSPI EAAGHVIPQS YVPVSVSQFM DNLLAENDTL VNPPVKTNVP RDDVCKEPSL RSVLSDPISG AFLEDAMVVS CGHSFGGLML
401: RRVLEMSRCT LCNTEIESGS LVPNHALRAA ASAIKQQDDK RLFHNAAMRR RRKEMSDQMD VENGDPATDD GMHRVVHYPF AVNEKVLIKG NRRTPEKFVG
501: KEAIVTSQCL NGWYLLKIVE SGDNVRLQYR SLKKMVNDDR GGGLQAQPVE SNSL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GWB1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.