CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90948
CDX97257
CDY01921
CDY64806

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19895.1	CDX90948	AT4G02150.1	21798944
AT3G19895.1	CDX97257	AT4G02150.1	21798944
AT3G19895.1	CDY01921	AT4G02150.1	21798944
AT3G19895.1	CDY64806	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038238.1-P	Field mustard	plastid	100.0	90.58
CDY33428	Canola	plastid	95.4	86.73
AT3G19895.1	Thale cress	plastid	89.2	80.51
VIT_01s0010g01230.t01	Wine grape	plastid	69.0	58.38
PGSC0003DMT400082437	Potato	plastid	64.8	57.96
Solyc04g009340.2.1	Tomato	nucleus	64.8	57.65
GSMUA_Achr4P11720_001	Banana	cytosol	20.4	57.63
KRH24219	Soybean	nucleus	67.4	57.41
KRH29221	Soybean	nucleus	67.0	57.27
TraesCS7B01G331900.1	Wheat	cytosol	33.2	53.04
TraesCS6D01G400800.1	Wheat	cytosol, nucleus, plastid	52.4	52.3
EES07813	Sorghum	plastid	51.8	52.22
TraesCS6A01G415200.1	Wheat	cytosol, nucleus, plastid	52.2	52.1
Os02t0829600-01	Rice	plastid	52.8	50.57
GSMUA_Achr4P11710_001	Banana	plastid	39.4	49.87
HORVU6Hr1G094240.3	Barley	nucleus, plastid	52.4	49.34
Zm00001d018533_P003	Maize	plastid	51.2	48.95
CDX95798	Canola	extracellular	6.2	27.43
CDY60118	Canola	nucleus	25.2	27.16
CDY23555	Canola	nucleus	25.2	27.1
CDX70167	Canola	nucleus	18.8	26.11
CDX98826	Canola	nucleus	18.2	24.93
CDY22467	Canola	mitochondrion	18.4	23.53
CDY69157	Canola	extracellular, golgi, vacuole	9.6	16.05

Protein Annotations

EnsemblPlants:CDY42216	EnsemblPlantsGene:GSBRNA2T00074429001	Gene3D:2.60.120.330	Gene3D:3.30.40.10	InterPro:IPNS-like	InterPro:IPR013083
InterPro:IPR027443	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR33644	PANTHER:PTHR33644:SF1	ProteinID:CDY42216	ProteinID:CDY42216.1
SUPFAM:SSF51197	SUPFAM:SSF57850	UniParc:UPI0004EDFED8	UniProt:A0A078HWT4	MapMan:35.1	:

Description

BnaA01g25790DBnaA01g25790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWT4]

Coordinates

chrLK032518:-:139337..142417

Molecular Weight (calculated)

53853.3 Da

IEP (calculated)

7.983

GRAVY (calculated)

-0.211

Length

500 amino acids

Sequence
(BLAST)

001: MSSSSGCPLA RVRLSDILPY EGAPSPSYAK AVEALSASLM RYNASVIELG SEDTALMRCG LEAARLYFRT RSSVSGKPNR GLSMYRAGRS VEDLDSSPPC
101: MAEVFRCLGK VARAALSAVA RHLRLRSDVF NHMLDDFPLA PNEVSSSVLV SSYAHASIQN GKPASGGGSI EIEKGLLTLF CSDGSGIQVC DPNGRWYAAD
201: SGCGIGDILL ITGKALSHAT AGLRPAASYR ATSDHFSGTD TRGRASLAFR LMPKSNAILD CSPVEAAGHV IPQSYVPVSV SQFMDNLLAE NETPVTPPVK
301: TNVSRDDVCK EPSLRSVLSD PVSGAFLEDA IVVSCGHSFG GLMLRRVLEM SRCTLCNAEI EPGSLVPNHA LRAAASAIKQ QDDKRLFHNA AMRRRRKEMS
401: DQMDVEHGDP ATDDGLQQRV VHYPFAVNEK VLIKGNRRTP EKYVGKEAIV TSQCLNGWYL LKIVESGDSV RLQYRSLKKM TNDDRGGGGL PVQPVESNSL

Best Arabidopsis Sequence Match ( AT3G19895.1 )
(BLAST)

001: MHRQGSSPIT PSNYNAAVSI ASDVPTGLTK SPLSHAIPVS PISAAYPSGD PILMMSGTPL ARVRLSEILP YEGAPSPVYA KAVEALSVSL MRYNASVIEI
101: GSEDTALMRC GLEAARLYFR TRSLTVSGKG NRGLSMYRAG RSVEDLDSSP PCMAEIFRCL GKVARAALSA IARHLRLRSD VFNHMLDDFP LAPNEVSSSV
201: LLASYAHASI QNGKHASGGG NLSAKIEVEK GLLTLFCSDG TGIQVCDPNG RWYTADNGCG VGDLLLITGK ALSHATAGLR PAASYRTTTD HLSATDTRGR
301: ASLAFRLMPK SNAILDCSPI EAAGHVIPQS YVPVSVSQFM DNLLAENDTL VNPPVKTNVP RDDVCKEPSL RSVLSDPISG AFLEDAMVVS CGHSFGGLML
401: RRVLEMSRCT LCNTEIESGS LVPNHALRAA ASAIKQQDDK RLFHNAAMRR RRKEMSDQMD VENGDPATDD GMHRVVHYPF AVNEKVLIKG NRRTPEKFVG
501: KEAIVTSQCL NGWYLLKIVE SGDNVRLQYR SLKKMVNDDR GGGLQAQPVE SNSL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GWB1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.