Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400018802 | |
| PGSC0003DMT400076768 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G19895.1 | PGSC0003DMT400018802 | AT4G02150.1 | 21798944 |
| AT3G19895.1 | PGSC0003DMT400076768 | AT4G02150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g009340.2.1 | Tomato | nucleus | 98.39 | 97.86 |
| PGSC0003DMT400048900 | Potato | cytosol | 11.27 | 75.9 |
| VIT_01s0010g01230.t01 | Wine grape | plastid | 70.66 | 66.84 |
| CDY42216 | Canola | cytosol, mitochondrion, plastid | 57.96 | 64.8 |
| GSMUA_Achr4P11720_001 | Banana | cytosol | 20.39 | 64.41 |
| KRH29221 | Soybean | nucleus | 66.55 | 63.59 |
| KRH24219 | Soybean | nucleus | 66.73 | 63.54 |
| AT3G19895.1 | Thale cress | plastid | 60.29 | 60.83 |
| Bra038238.1-P | Field mustard | plastid | 58.68 | 59.42 |
| CDY33428 | Canola | plastid | 58.14 | 59.09 |
| GSMUA_Achr4P11710_001 | Banana | plastid | 40.07 | 56.71 |
| TraesCS6A01G415200.1 | Wheat | cytosol, nucleus, plastid | 50.8 | 56.69 |
| TraesCS7B01G331900.1 | Wheat | cytosol | 31.48 | 56.23 |
| TraesCS6D01G400800.1 | Wheat | cytosol, nucleus, plastid | 50.27 | 56.09 |
| EES07813 | Sorghum | plastid | 49.55 | 55.85 |
| Os02t0829600-01 | Rice | plastid | 51.52 | 55.17 |
| HORVU6Hr1G094240.3 | Barley | nucleus, plastid | 50.98 | 53.67 |
| Zm00001d018533_P003 | Maize | plastid | 49.91 | 53.35 |
| PGSC0003DMT400057242 | Potato | nucleus | 21.82 | 25.85 |
| PGSC0003DMT400030432 | Potato | nucleus | 18.25 | 24.11 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400082437 | EnsemblPlantsGene:PGSC0003DMG400032542 | EntrezGene:102597261 | Gene3D:2.60.120.330 | Gene3D:3.30.40.10 | InterPro:IPNS-like |
| InterPro:IPR013083 | InterPro:IPR027443 | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR33644 | PANTHER:PTHR33644:SF1 | PGSC:PGSC0003DMG400032542 |
| RefSeq:XP_006359309.1 | SEG:seg | SUPFAM:SSF51197 | SUPFAM:SSF57850 | UniParc:UPI0002962260 | UniProt:M1D5X8 |
| MapMan:35.1 | : | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400032542]
Coordinates
chr4:-:4917150..4927116
Molecular Weight (calculated)
60282.9 Da
IEP (calculated)
8.261
GRAVY (calculated)
-0.255
Length
559 amino acids
Sequence
(BLAST)
(BLAST)
001: MVMVMMHQHQ HHHSTAPSTH PINPPPPSSA SVLRSPNTST SNTQQFPSIG SPSVEHGLPL ARVKLSDIVP YDGAPVGPYL RAVEALSGSL MRHNAAVIEL
101: GGEGTAVLRC GLESVRYFFK TRAVAQNGGG GAALGKSGRG VYIYRAGRPL EDMDSSPPCM TEVFRCMGRA ARAALCAIAR HLRLRSDVFN HLLDDNPLPV
201: NEASSSVVVA TFSNTTSQNG KGAIGGGKLV TNGEVEKGLL TLVSSDAPGL QVCDPNGRWY LADSGLTPGD LLLLTGKALS HATAGLRPAA VYRGSADNYV
301: GTTCGGRTSL AFRLIPQSNA ILDCSPITAA GHVIPHSYVP ISVSQFMDDL SAEEDMLCSN TDNAYVSRDN LNKEPSLRSV LSDPLSGTFL EDAMFVSCGH
401: SFGGLMLKRV IDMARCTLCN AEIERGSLIP NHVLRTAAAA VKHEDDRRLF HNAALRKRRK EVGDIRENGE LPSENGPHKG VQYPFSVNEK VLIRGNRRTP
501: DKFVGKEAVI TSQCLNGWYL LKIMDSGENV RLQYRSLRKF LPTQETEERC QSQTVQNSS
101: GGEGTAVLRC GLESVRYFFK TRAVAQNGGG GAALGKSGRG VYIYRAGRPL EDMDSSPPCM TEVFRCMGRA ARAALCAIAR HLRLRSDVFN HLLDDNPLPV
201: NEASSSVVVA TFSNTTSQNG KGAIGGGKLV TNGEVEKGLL TLVSSDAPGL QVCDPNGRWY LADSGLTPGD LLLLTGKALS HATAGLRPAA VYRGSADNYV
301: GTTCGGRTSL AFRLIPQSNA ILDCSPITAA GHVIPHSYVP ISVSQFMDDL SAEEDMLCSN TDNAYVSRDN LNKEPSLRSV LSDPLSGTFL EDAMFVSCGH
401: SFGGLMLKRV IDMARCTLCN AEIERGSLIP NHVLRTAAAA VKHEDDRRLF HNAALRKRRK EVGDIRENGE LPSENGPHKG VQYPFSVNEK VLIRGNRRTP
501: DKFVGKEAVI TSQCLNGWYL LKIMDSGENV RLQYRSLRKF LPTQETEERC QSQTVQNSS
001: MHRQGSSPIT PSNYNAAVSI ASDVPTGLTK SPLSHAIPVS PISAAYPSGD PILMMSGTPL ARVRLSEILP YEGAPSPVYA KAVEALSVSL MRYNASVIEI
101: GSEDTALMRC GLEAARLYFR TRSLTVSGKG NRGLSMYRAG RSVEDLDSSP PCMAEIFRCL GKVARAALSA IARHLRLRSD VFNHMLDDFP LAPNEVSSSV
201: LLASYAHASI QNGKHASGGG NLSAKIEVEK GLLTLFCSDG TGIQVCDPNG RWYTADNGCG VGDLLLITGK ALSHATAGLR PAASYRTTTD HLSATDTRGR
301: ASLAFRLMPK SNAILDCSPI EAAGHVIPQS YVPVSVSQFM DNLLAENDTL VNPPVKTNVP RDDVCKEPSL RSVLSDPISG AFLEDAMVVS CGHSFGGLML
401: RRVLEMSRCT LCNTEIESGS LVPNHALRAA ASAIKQQDDK RLFHNAAMRR RRKEMSDQMD VENGDPATDD GMHRVVHYPF AVNEKVLIKG NRRTPEKFVG
501: KEAIVTSQCL NGWYLLKIVE SGDNVRLQYR SLKKMVNDDR GGGLQAQPVE SNSL
101: GSEDTALMRC GLEAARLYFR TRSLTVSGKG NRGLSMYRAG RSVEDLDSSP PCMAEIFRCL GKVARAALSA IARHLRLRSD VFNHMLDDFP LAPNEVSSSV
201: LLASYAHASI QNGKHASGGG NLSAKIEVEK GLLTLFCSDG TGIQVCDPNG RWYTADNGCG VGDLLLITGK ALSHATAGLR PAASYRTTTD HLSATDTRGR
301: ASLAFRLMPK SNAILDCSPI EAAGHVIPQS YVPVSVSQFM DNLLAENDTL VNPPVKTNVP RDDVCKEPSL RSVLSDPISG AFLEDAMVVS CGHSFGGLML
401: RRVLEMSRCT LCNTEIESGS LVPNHALRAA ASAIKQQDDK RLFHNAAMRR RRKEMSDQMD VENGDPATDD GMHRVVHYPF AVNEKVLIKG NRRTPEKFVG
501: KEAIVTSQCL NGWYLLKIVE SGDNVRLQYR SLKKMVNDDR GGGLQAQPVE SNSL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GWB1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.