Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 3
- nucleus 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0253300-01 | Rice | cytosol | 42.7 | 7.22 |
| PGSC0003DMT400018802 | Potato | cytosol | 42.7 | 7.21 |
| TraesCS3D01G178500.1 | Wheat | cytosol | 41.57 | 7.06 |
| TraesCS3A01G172000.1 | Wheat | golgi, nucleus | 41.57 | 7.06 |
| HORVU3Hr1G034750.5 | Barley | cytosol | 41.57 | 6.94 |
| KXG32187 | Sorghum | cytosol | 40.45 | 6.82 |
| Zm00001d040274_P001 | Maize | cytosol | 40.45 | 6.81 |
| Zm00001d008345_P003 | Maize | cytosol | 40.45 | 6.79 |
| PGSC0003DMT400007130 | Potato | cytosol | 40.45 | 6.74 |
| PGSC0003DMT400076860 | Potato | cytosol | 39.33 | 6.62 |
| PGSC0003DMT400038784 | Potato | cytosol | 39.33 | 6.62 |
| VIT_07s0005g01100.t01 | Wine grape | cytosol | 38.2 | 6.43 |
| CDY01921 | Canola | cytosol | 38.2 | 6.4 |
| CDX97257 | Canola | cytosol | 38.2 | 6.4 |
| Bra008559.1-P | Field mustard | cytosol | 38.2 | 6.4 |
| TraesCS3B01G202800.2 | Wheat | cytosol | 38.2 | 6.33 |
| AT1G02690.2 | Thale cress | cytosol | 38.2 | 6.31 |
| AT4G02150.1 | Thale cress | cytosol | 37.08 | 6.21 |
| Bra033342.1-P | Field mustard | cytosol | 35.96 | 6.14 |
| CDX89948 | Canola | cytosol | 35.96 | 6.14 |
| CDY64806 | Canola | cytosol | 33.71 | 5.79 |
| Bra000891.1-P | Field mustard | cytosol | 32.58 | 5.6 |
| CDX90948 | Canola | cytosol | 32.58 | 5.6 |
| CDY15260 | Canola | cytosol | 38.2 | 4.39 |
| PGSC0003DMT400027134 | Potato | cytosol | 13.48 | 2.31 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400076768 | EnsemblPlantsGene:PGSC0003DMG400029854 | Gene3D:1.25.10.10 | InterPro:ARM-like | InterPro:IPR011989 | PANTHER:PTHR23316 |
| PANTHER:PTHR23316:SF17 | PGSC:PGSC0003DMG400029854 | UniParc:UPI000296D377 | UniProt:M1CXD2 | MapMan:35.2 | : |
Description
Importin alpha [Source:PGSC_GENE;Acc:PGSC0003DMG400029854]
Coordinates
chr10:-:58140370..58140984
Molecular Weight (calculated)
9984.1 Da
IEP (calculated)
8.488
GRAVY (calculated)
-0.183
Length
89 amino acids
Sequence
(BLAST)
(BLAST)
1: MLRYLVDHGS IAALCQGLLC EGYIRRTSCF QGLRSILRVG EAHKVDGVNV YTQMITENGG LARIKSQRDD RDVGEIARRL LSSYWPGEV
001: MSLRPNAKTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLQKKRR EGLQANQLPQ FAPSPVPASS TVEKKLESLP AMVGGVWSDD RSLQLEATTQ
101: FRKLLSIERS PPIEEVIDAG VVPRFVEFLT REDYPQLQFE AAWALTNIAS GTSENTKVVI EHGAVPIFVQ LLASQSDDVR EQAVWALGNV AGDSPRCRDL
201: VLGQGALIPL LSQLNEHAKL SMLRNATWTL SNFCRGKPQP PFDQVRPALP ALERLIHSTD EEVLTDACWA LSYLSDGTND KIQSVIEAGV VPRLVELLQH
301: QSPSVLIPAL RSIGNIVTGD DLQTQCVISH GALLSLLSLL THNHKKSIKK EACWTISNIT AGNRDQIQAV CEAGLICPLV NLLQNAEFDI KKEAAWAISN
401: ATSGGSPDQI KYMVEQGVVK PLCDLLVCPD PRIITVCLEG LENILKVGEA EKVTGNTGDV NFYAQLIDDA EGLEKIENLQ SHDNSEIYEK AVKILETYWL
501: EEEDETLPPG DPSAQGFQFG GGNDAAVPPG GFNFQ
101: FRKLLSIERS PPIEEVIDAG VVPRFVEFLT REDYPQLQFE AAWALTNIAS GTSENTKVVI EHGAVPIFVQ LLASQSDDVR EQAVWALGNV AGDSPRCRDL
201: VLGQGALIPL LSQLNEHAKL SMLRNATWTL SNFCRGKPQP PFDQVRPALP ALERLIHSTD EEVLTDACWA LSYLSDGTND KIQSVIEAGV VPRLVELLQH
301: QSPSVLIPAL RSIGNIVTGD DLQTQCVISH GALLSLLSLL THNHKKSIKK EACWTISNIT AGNRDQIQAV CEAGLICPLV NLLQNAEFDI KKEAAWAISN
401: ATSGGSPDQI KYMVEQGVVK PLCDLLVCPD PRIITVCLEG LENILKVGEA EKVTGNTGDV NFYAQLIDDA EGLEKIENLQ SHDNSEIYEK AVKILETYWL
501: EEEDETLPPG DPSAQGFQFG GGNDAAVPPG GFNFQ
Arabidopsis Description
IMPA2Importin subunit alpha-2 [Source:UniProtKB/Swiss-Prot;Acc:F4JL11]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.