Factsheet for PGSC0003DMT400000462

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
extracellular 1
cytosol 1
plasma membrane 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000462
PGSC0003DMT400026584
PGSC0003DMT400055730
PGSC0003DMT400058306

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45820.1	PGSC0003DMT400058306	AT1G10470.1	9771897
AT2G45820.1	PGSC0003DMT400000462	AT2G45820.1	21798944
AT2G45820.1	PGSC0003DMT400026584	AT2G45820.1	21798944
AT2G45820.1	PGSC0003DMT400055730	AT2G45820.1	21798944
AT3G61260.1	PGSC0003DMT400058306	AT1G10470.1	9771897

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g094370.2.1	Tomato	plastid	93.68	93.68
PGSC0003DMT400055730	Potato	cytosol	20.69	69.23
PGSC0003DMT400026584	Potato	nucleus	62.64	57.07
Zm00001d002842_P001	Maize	extracellular, mitochondrion, plasma membrane	61.49	53.77
CDX71754	Canola	cytosol, mitochondrion, nucleus	55.17	53.33
CDY06318	Canola	cytosol, nucleus, plastid	59.77	53.33
KRH00705	Soybean	cytosol, nucleus, plastid	55.75	53.01
Bra039311.1-P	Field mustard	cytosol, nucleus, plastid	59.2	52.82
CDY27356	Canola	nucleus	59.2	52.82
CDY37068	Canola	nucleus	59.2	52.82
AT2G45820.1	Thale cress	cytosol	57.47	52.63
CDX74768	Canola	nucleus	57.47	52.08
Bra004940.1-P	Field mustard	nucleus	57.47	52.08
CDY18898	Canola	cytosol	56.9	51.56
VIT_15s0046g03180.t01	Wine grape	nucleus	58.05	51.53
GSMUA_Achr5P12250_001	Banana	cytosol	54.02	50.54
KRH40491	Soybean	cytosol	52.87	50.27
Zm00001d025932_P003	Maize	mitochondrion	57.47	50.0
KRH48177	Soybean	plasma membrane	56.9	50.0
TraesCS6D01G219800.1	Wheat	cytosol	54.6	49.74
EER93970	Sorghum	nucleus	44.25	49.68
EES12557	Sorghum	cytosol	60.34	49.53
KRH65100	Soybean	cytosol	56.9	49.5
PGSC0003DMT400037192	Potato	cytosol	56.32	49.49
Bra007589.1-P	Field mustard	nucleus	55.17	49.48
CDY48933	Canola	cytosol	55.17	49.48
TraesCS6A01G237200.2	Wheat	cytosol	54.02	48.7
TraesCS6B01G265700.2	Wheat	cytosol	53.45	48.69
TraesCS1D01G164300.1	Wheat	nucleus	49.43	48.59
TraesCS1A01G174700.1	Wheat	nucleus	49.43	48.59
GSMUA_Achr11P...	Banana	nucleus	54.02	47.96
GSMUA_Achr1P00240_001	Banana	nucleus	52.87	47.92
GSMUA_Achr1P03030_001	Banana	nucleus	51.72	47.37
HORVU6Hr1G060700.5	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	51.72	47.12
TraesCSU01G033600.1	Wheat	cytosol	47.13	46.86
Os04t0533300-02	Rice	extracellular, plasma membrane	55.75	46.41
HORVU4Hr1G089540.2	Barley	cytosol	46.55	46.29
TraesCS4B01G393000.1	Wheat	cytosol	46.55	46.29
TraesCS2A01G369800.1	Wheat	nucleus	55.75	46.19
Os02t0642200-01	Rice	plasma membrane	53.45	45.81
TraesCS5A01G554600.1	Wheat	cytosol	46.55	45.76
KXG31130	Sorghum	cytosol	51.15	45.41
TraesCS2B01G386900.1	Wheat	nucleus	55.75	45.33
TraesCS2D01G366300.2	Wheat	nucleus	55.75	45.33
AT3G61260.1	Thale cress	nucleus	55.17	45.28
PGSC0003DMT400007918	Potato	cytosol	49.43	45.26
Os03t0111200-01	Rice	nucleus	45.4	45.14
Zm00001d017386_P001	Maize	cytosol	47.7	44.62
EER92997	Sorghum	nucleus	45.98	44.2
GSMUA_Achr4P25330_001	Banana	nucleus	44.83	43.82
Zm00001d027330_P001	Maize	extracellular, mitochondrion, plasma membrane	45.4	43.17
HORVU1Hr1G045920.1	Barley	nucleus	25.86	42.45
Os10t0503800-01	Rice	nucleus	27.01	35.34
HORVU2Hr1G091680.3	Barley	cytosol, plasma membrane	52.3	30.33
GSMUA_Achr5P10760_001	Banana	cytosol	46.55	30.22

Protein Annotations

EnsemblPlants:PGSC0003DMT400000462	EnsemblPlantsGene:PGSC0003DMG400000157	EntrezGene:102585991	InterPro:Remorin_C	InterPro:Remorin_N	ncoils:Coil
PANTHER:PTHR31775	PANTHER:PTHR31775:SF2	PFAM:PF03763	PFAM:PF03766	PGSC:PGSC0003DMG400000157	RefSeq:XP_006339544.1
SEG:seg	UniParc:UPI0002965B00	UniProt:M0ZGS2	MapMan:35.1	:	:

Description

Remorin 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400000157]

Coordinates

chr1:-:71942359..71946082

Molecular Weight (calculated)

19131.9 Da

IEP (calculated)

9.742

GRAVY (calculated)

-0.910

Length

174 amino acids

Sequence
(BLAST)

001: MAEATAVAAQ PQPELPPPPA MAKTDDSKAL ATLPPTKPDS STKKSSKGSL DRDVALAHLE TEKKNSYIKA WEESEKSKVN NKAEKKLSSV GTWENTKKAN
101: IEAKLKKLEE QLEQKKAEYA EKIKNRVAAV HMEAEEKRAM VEARRGEELL KAEEMAAKYR ATGQAPKKIG CLGC

Best Arabidopsis Sequence Match ( AT5G23750.3 )
(BLAST)

001: MTTRNRTSLP NISSSVSSNK NIVVPNIMAE EEPKKVTETV SEPTPTPEVP VEKPAAAADV APQEKPVAPP PVLPSPAPAE EKQEDSKAIV PVVPKEVEEE
101: KKEGSVNRDA VLARVETEKR MSLIKAWEEA EKCKVENKAE KKLSSIGSWE NNKKAAVEAE LKKMEEQLEK KKAEYVEQMK NKIAQIHKEA EEKRAMIEAK
201: RGEEILKAEE LAAKYRATGT APKKLFGCM

Arabidopsis Description

Remorin family protein [Source:TAIR;Acc:AT5G23750]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.