Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37068 | Canola | nucleus | 98.97 | 98.97 |
| Bra039311.1-P | Field mustard | cytosol, nucleus, plastid | 96.92 | 96.92 |
| CDY27356 | Canola | nucleus | 93.33 | 93.33 |
| CDX74768 | Canola | nucleus | 85.13 | 86.46 |
| CDY18898 | Canola | cytosol | 84.1 | 85.42 |
| AT2G45820.1 | Thale cress | cytosol | 80.0 | 82.11 |
| PGSC0003DMT400055730 | Potato | cytosol | 18.46 | 69.23 |
| CDY69344 | Canola | cytosol | 43.59 | 65.38 |
| CDY05883 | Canola | mitochondrion | 39.49 | 64.17 |
| CDX71754 | Canola | cytosol, mitochondrion, nucleus | 58.46 | 63.33 |
| KRH00705 | Soybean | cytosol, nucleus, plastid | 57.44 | 61.2 |
| KRH48177 | Soybean | plasma membrane | 62.05 | 61.11 |
| CDY48933 | Canola | cytosol | 59.49 | 59.79 |
| PGSC0003DMT400000462 | Potato | cytosol, mitochondrion, nucleus, plastid | 53.33 | 59.77 |
| VIT_15s0046g03180.t01 | Wine grape | nucleus | 59.49 | 59.18 |
| CDY71834 | Canola | cytosol, mitochondrion, nucleus | 52.82 | 58.52 |
| Solyc01g094370.2.1 | Tomato | plastid | 51.79 | 58.05 |
| KRH40491 | Soybean | cytosol | 54.36 | 57.92 |
| GSMUA_Achr1P00240_001 | Banana | nucleus | 56.92 | 57.81 |
| Zm00001d002842_P001 | Maize | extracellular, mitochondrion, plasma membrane | 58.46 | 57.29 |
| Solyc05g048820.2.1 | Tomato | nucleus, plastid | 44.62 | 56.86 |
| KRH65100 | Soybean | cytosol | 57.95 | 56.5 |
| GSMUA_Achr1P03030_001 | Banana | nucleus | 54.36 | 55.79 |
| TraesCS2A01G369800.1 | Wheat | nucleus | 60.0 | 55.71 |
| GSMUA_Achr11P... | Banana | nucleus | 55.9 | 55.61 |
| GSMUA_Achr4P25330_001 | Banana | nucleus | 49.74 | 54.49 |
| EES12557 | Sorghum | cytosol | 58.97 | 54.25 |
| TraesCS2B01G386900.1 | Wheat | nucleus | 58.97 | 53.74 |
| TraesCS6B01G265700.2 | Wheat | cytosol | 52.31 | 53.4 |
| TraesCS2D01G366300.2 | Wheat | nucleus | 58.46 | 53.27 |
| TraesCS6D01G219800.1 | Wheat | cytosol | 51.79 | 52.88 |
| CDX87157 | Canola | cytosol | 52.31 | 52.58 |
| TraesCS6A01G237200.2 | Wheat | cytosol | 51.79 | 52.33 |
| Zm00001d025932_P003 | Maize | mitochondrion | 52.82 | 51.5 |
| TraesCS1A01G174700.1 | Wheat | nucleus | 46.67 | 51.41 |
| TraesCS1D01G164300.1 | Wheat | nucleus | 46.67 | 51.41 |
| KXG31130 | Sorghum | cytosol | 50.77 | 50.51 |
| Os03t0111200-01 | Rice | nucleus | 45.13 | 50.29 |
| CDX88048 | Canola | nucleus | 52.82 | 50.24 |
| Zm00001d017386_P001 | Maize | cytosol | 47.69 | 50.0 |
| EER92997 | Sorghum | nucleus | 46.15 | 49.72 |
| EER93970 | Sorghum | nucleus | 39.49 | 49.68 |
| GSMUA_Achr5P12250_001 | Banana | cytosol | 47.18 | 49.46 |
| TraesCS5A01G554600.1 | Wheat | cytosol | 44.62 | 49.15 |
| TraesCS4B01G393000.1 | Wheat | cytosol | 44.1 | 49.14 |
| TraesCSU01G033600.1 | Wheat | cytosol | 44.1 | 49.14 |
| HORVU4Hr1G089540.2 | Barley | cytosol | 44.1 | 49.14 |
| Os04t0533300-02 | Rice | extracellular, plasma membrane | 51.79 | 48.33 |
| HORVU6Hr1G060700.5 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 45.64 | 46.6 |
| Zm00001d027330_P001 | Maize | extracellular, mitochondrion, plasma membrane | 43.59 | 46.45 |
| Solyc10g017540.2.1 | Tomato | nucleus | 43.59 | 44.97 |
| Os02t0642200-01 | Rice | plasma membrane | 46.67 | 44.83 |
| PGSC0003DMT400026584 | Potato | nucleus | 43.59 | 44.5 |
| HORVU1Hr1G045920.1 | Barley | nucleus | 22.05 | 40.57 |
| GSMUA_Achr5P10760_001 | Banana | cytosol | 50.26 | 36.57 |
| Os10t0503800-01 | Rice | nucleus | 24.62 | 36.09 |
| HORVU2Hr1G091680.3 | Barley | cytosol, plasma membrane | 51.79 | 33.67 |
| CDY66598 | Canola | cytosol, nucleus, plastid | 16.92 | 31.73 |
| CDX74343 | Canola | nucleus | 18.97 | 28.03 |
| CDX91900 | Canola | cytosol, mitochondrion, nucleus | 18.46 | 27.27 |
Protein Annotations
| EnsemblPlants:CDY06318 | EnsemblPlantsGene:GSBRNA2T00122246001 | InterPro:Remorin_C | InterPro:Remorin_N | ncoils:Coil | PANTHER:PTHR31775 |
| PANTHER:PTHR31775:SF2 | PFAM:PF03763 | PFAM:PF03766 | ProteinID:CDY06318 | ProteinID:CDY06318.1 | SEG:seg |
| UniParc:UPI0004EE33B4 | MapMan:35.1 | : | : | : | : |
Description
BnaA09g48850D
Coordinates
chrLK031968:+:776688..778369
Molecular Weight (calculated)
21553.6 Da
IEP (calculated)
6.579
GRAVY (calculated)
-0.883
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEQKTTKV DVESPAVSAP EKEPAPAPVE ASTEVAEEKV HDPPPPVESK ALAVVEKPIE EPTPKKSSSG SIDRDVKLAD LEKEKKTSFI KAWEESEKSK
101: AENKAQKKVS DVLAWENSQK AAIEARLRKI EEKLEKKKAE YGEKMKNKVA AIHKEAEEKR AMVEAKRGEE LLKAEEMAAK YRATGIVPKA TCGCF
101: AENKAQKKVS DVLAWENSQK AAIEARLRKI EEKLEKKKAE YGEKMKNKVA AIHKEAEEKR AMVEAKRGEE LLKAEEMAAK YRATGIVPKA TCGCF
001: MAEEQKTSKV DVESPAVLAP AKEPTPAPVE VADEKIHNPP PVESKALAVV EKPIEEHTPK KASSGSADRD VILADLEKEK KTSFIKAWEE SEKSKAENRA
101: QKKISDVHAW ENSKKAAVEA QLRKIEEKLE KKKAQYGEKM KNKVAAIHKL AEEKRAMVEA KKGEELLKAE EMGAKYRATG VVPKATCGCF
101: QKKISDVHAW ENSKKAAVEA QLRKIEEKLE KKKAQYGEKM KNKVAAIHKL AEEKRAMVEA KKGEELLKAE EMGAKYRATG VVPKATCGCF
Arabidopsis Description
DBPRemorin [Source:UniProtKB/Swiss-Prot;Acc:O80837]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.