CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99225
KRH00705
KRH40491
KRH45761
KRH48177
KRH65100
KRH69443
KRH74701

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45820.1	KRG99225	AT1G10470.1	9771897
AT2G45820.1	KRH45761	AT1G10470.1	9771897
AT2G45820.1	KRH69443	AT1G10470.1	9771897
AT2G45820.1	KRH74701	AT1G10470.1	9771897
AT2G45820.1	KRH00705	AT2G45820.1	21798944
AT2G45820.1	KRH40491	AT2G45820.1	21798944
AT2G45820.1	KRH48177	AT2G45820.1	21798944
AT2G45820.1	KRH65100	AT2G45820.1	21798944
AT3G61260.1	KRG99225	AT1G10470.1	9771897
AT3G61260.1	KRH45761	AT1G10470.1	9771897
AT3G61260.1	KRH69443	AT1G10470.1	9771897
AT3G61260.1	KRH74701	AT1G10470.1	9771897

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00705	Soybean	cytosol, nucleus, plastid	83.06	83.06
PGSC0003DMT400055730	Potato	cytosol	19.13	67.31
KRH48177	Soybean	plasma membrane	64.48	59.6
KRH65100	Soybean	cytosol	63.39	58.0
CDY37068	Canola	nucleus	57.92	54.36
CDY06318	Canola	cytosol, nucleus, plastid	57.92	54.36
Solyc05g048820.2.1	Tomato	nucleus, plastid	45.36	54.25
Bra039311.1-P	Field mustard	cytosol, nucleus, plastid	57.38	53.85
CDY27356	Canola	nucleus	56.83	53.33
CDX71754	Canola	cytosol, mitochondrion, nucleus	52.46	53.33
PGSC0003DMT400000462	Potato	cytosol, mitochondrion, nucleus, plastid	50.27	52.87
AT2G45820.1	Thale cress	cytosol	54.64	52.63
Bra007589.1-P	Field mustard	nucleus	55.74	52.58
VIT_15s0046g03180.t01	Wine grape	nucleus	56.28	52.55
CDY48933	Canola	cytosol	55.19	52.06
KRH35326	Soybean	nucleus	55.19	52.06
Zm00001d002842_P001	Maize	extracellular, mitochondrion, plasma membrane	56.28	51.76
Solyc01g094370.2.1	Tomato	plastid	49.18	51.72
CDX74768	Canola	nucleus	54.1	51.56
Bra004940.1-P	Field mustard	nucleus	54.1	51.56
KRG91502	Soybean	nucleus	55.19	51.27
CDY18898	Canola	cytosol	53.01	50.52
GSMUA_Achr1P03030_001	Banana	nucleus	51.91	50.0
GSMUA_Achr1P00240_001	Banana	nucleus	51.37	48.96
GSMUA_Achr4P25330_001	Banana	nucleus	47.54	48.88
TraesCS6D01G219800.1	Wheat	cytosol	50.82	48.69
AT3G61260.1	Thale cress	nucleus	56.28	48.58
EES12557	Sorghum	cytosol	55.74	48.11
KRH38487	Soybean	nucleus	54.1	48.06
GSMUA_Achr11P...	Banana	nucleus	51.37	47.96
KRH09020	Soybean	nucleus	53.55	47.8
TraesCS6B01G265700.2	Wheat	cytosol	49.73	47.64
Zm00001d025932_P003	Maize	mitochondrion	51.91	47.5
Os03t0111200-01	Rice	nucleus	45.36	47.43
Os02t0642200-01	Rice	plasma membrane	52.46	47.29
KXG31130	Sorghum	cytosol	50.27	46.94
TraesCS1D01G164300.1	Wheat	nucleus	45.36	46.89
TraesCS1A01G174700.1	Wheat	nucleus	45.36	46.89
TraesCS2A01G369800.1	Wheat	nucleus	53.55	46.67
Zm00001d017386_P001	Maize	cytosol	46.99	46.24
TraesCS6A01G237200.2	Wheat	cytosol	48.63	46.11
EER93970	Sorghum	nucleus	38.8	45.81
TraesCS2D01G366300.2	Wheat	nucleus	53.55	45.79
TraesCS2B01G386900.1	Wheat	nucleus	53.55	45.79
Os04t0533300-02	Rice	extracellular, plasma membrane	51.91	45.45
GSMUA_Achr5P12250_001	Banana	cytosol	45.9	45.16
HORVU4Hr1G089540.2	Barley	cytosol	43.17	45.14
TraesCS5A01G554600.1	Wheat	cytosol	43.17	44.63
TraesCSU01G033600.1	Wheat	cytosol	42.62	44.57
HORVU6Hr1G060700.5	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	45.9	43.98
Zm00001d027330_P001	Maize	extracellular, mitochondrion, plasma membrane	43.72	43.72
EER92997	Sorghum	nucleus	43.17	43.65
TraesCS4B01G393000.1	Wheat	cytosol	41.53	43.43
HORVU1Hr1G045920.1	Barley	nucleus	25.14	43.4
PGSC0003DMT400026584	Potato	nucleus	44.26	42.41
KRH77513	Soybean	cytosol, nucleus, plastid	44.26	42.41
Solyc10g017540.2.1	Tomato	nucleus	43.17	41.8
KRH41149	Soybean	extracellular	42.62	40.21
KRH59848	Soybean	extracellular	39.89	39.89
KRH27955	Soybean	nucleus	42.62	36.28
GSMUA_Achr5P10760_001	Banana	cytosol	51.37	35.07
Os10t0503800-01	Rice	nucleus	24.59	33.83
HORVU2Hr1G091680.3	Barley	cytosol, plasma membrane	49.73	30.33

Protein Annotations

EMBL:ACUP02006038	EnsemblPlants:KRH40491	EnsemblPlantsGene:GLYMA_09G261700	EntrezGene:100817104	InterPro:Remorin_C	InterPro:Remorin_N
ncoils:Coil	PANTHER:PTHR31775	PANTHER:PTHR31775:SF2	PFAM:PF03763	PFAM:PF03766	ProteinID:KRH40491
ProteinID:KRH40491.1	SEG:seg	UniParc:UPI0002338BBA	UniProt:I1L6M0	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr9:-:47960612..47965269

Molecular Weight (calculated)

20144.9 Da

IEP (calculated)

8.671

GRAVY (calculated)

-0.851

Length

183 amino acids

Sequence
(BLAST)

001: MPELQSKPET ALAPAPVAAE VPSNDAVAKK ASETEESKAT VVASEKTPVP ENKQSSRGSI DRDIALAEVE KEKKLSYVKA WEESEKAKAE NRAQKQLSAI
101: AAWENSKKAT LEAELKKIEE QLEKKKAEHG ERMKNKVALV HKEAGEKRAM IEANRCEEVL KTEEVAAKYR ATGTTPKKTI GCF

Best Arabidopsis Sequence Match ( AT3G48940.1 )
(BLAST)

001: MTLEEQKKVI MPEAVASEPS PPSKEEKSDD SKAIVLVVAA KEPTEDKKVG SVHRDAVLVR LEQDKRISLI KAWEEAEKSK VENKAQKKIS SVGAWENSKK
101: ASVEAELKKI EEQLNKKKAH YTEQMKNKIA QIHKEAEEKR AMTEAKRGED VLKAEEMAAK YRATGTAPTK LFGFF

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q9SMT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.