Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G164300.1 | Wheat | nucleus | 98.31 | 98.31 |
| HORVU1Hr1G045920.1 | Barley | nucleus | 38.98 | 65.09 |
| Os10t0503800-01 | Rice | nucleus | 46.33 | 61.65 |
| EER93970 | Sorghum | nucleus | 52.54 | 60.0 |
| PGSC0003DMT400055730 | Potato | cytosol | 16.95 | 57.69 |
| TraesCS5A01G554600.1 | Wheat | cytosol | 56.5 | 56.5 |
| GSMUA_Achr1P03030_001 | Banana | nucleus | 57.63 | 53.68 |
| GSMUA_Achr11P... | Banana | nucleus | 57.63 | 52.04 |
| GSMUA_Achr1P00240_001 | Banana | nucleus | 55.37 | 51.04 |
| GSMUA_Achr4P25330_001 | Banana | nucleus | 50.85 | 50.56 |
| PGSC0003DMT400000462 | Potato | cytosol, mitochondrion, nucleus, plastid | 48.59 | 49.43 |
| Solyc01g094370.2.1 | Tomato | plastid | 48.59 | 49.43 |
| KRH00705 | Soybean | cytosol, nucleus, plastid | 50.28 | 48.63 |
| CDY27356 | Canola | nucleus | 52.54 | 47.69 |
| CDY37068 | Canola | nucleus | 51.41 | 46.67 |
| CDY06318 | Canola | cytosol, nucleus, plastid | 51.41 | 46.67 |
| CDX71754 | Canola | cytosol, mitochondrion, nucleus | 47.46 | 46.67 |
| Bra039311.1-P | Field mustard | cytosol, nucleus, plastid | 51.41 | 46.67 |
| Solyc05g048820.2.1 | Tomato | nucleus, plastid | 40.11 | 46.41 |
| CDX74768 | Canola | nucleus | 50.28 | 46.35 |
| Bra004940.1-P | Field mustard | nucleus | 50.28 | 46.35 |
| KRH48177 | Soybean | plasma membrane | 51.41 | 45.96 |
| TraesCS2A01G369800.1 | Wheat | nucleus | 54.24 | 45.71 |
| TraesCS6A01G237200.2 | Wheat | cytosol | 49.72 | 45.6 |
| KRH40491 | Soybean | cytosol | 46.89 | 45.36 |
| CDY18898 | Canola | cytosol | 49.15 | 45.31 |
| AT2G45820.1 | Thale cress | cytosol | 48.59 | 45.26 |
| GSMUA_Achr5P12250_001 | Banana | cytosol | 46.89 | 44.62 |
| Bra007589.1-P | Field mustard | nucleus | 48.59 | 44.33 |
| CDY48933 | Canola | cytosol | 48.59 | 44.33 |
| VIT_15s0046g03180.t01 | Wine grape | nucleus | 48.59 | 43.88 |
| AT3G61260.1 | Thale cress | nucleus | 52.54 | 43.87 |
| KRH65100 | Soybean | cytosol | 49.15 | 43.5 |
| PGSC0003DMT400026584 | Potato | nucleus | 41.81 | 38.74 |
| TraesCS6A01G403500.1 | Wheat | nucleus | 37.29 | 38.6 |
| Solyc10g017540.2.1 | Tomato | nucleus | 40.68 | 38.1 |
| GSMUA_Achr5P10760_001 | Banana | cytosol | 53.67 | 35.45 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G174700.1 | EnsemblPlantsGene:TraesCS1A01G174700 | InterPro:Remorin_C | InterPro:Remorin_N | ncoils:Coil | PANTHER:PTHR31775 |
| PANTHER:PTHR31775:SF4 | PFAM:PF03763 | PFAM:PF03766 | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr1A:-:312160211..312161238
Molecular Weight (calculated)
19238.7 Da
IEP (calculated)
5.539
GRAVY (calculated)
-0.789
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEAKQDVA PPAPEPTEDV ADEKAAVPSP EESKALVVAE NDAEKPAATG GSHERDALLT RVATEKRISL IKAWEENEKA KAENKAVKLL ADITSWENSK
101: AAELEAELKK MQEQLEKKKA RCVEKLKNSA ATVHKEAEEK RAAAEARRGE EIVAAEVTAA KYRAKGEAPK KLLFGRG
101: AAELEAELKK MQEQLEKKKA RCVEKLKNSA ATVHKEAEEK RAAAEARRGE EIVAAEVTAA KYRAKGEAPK KLLFGRG
001: MAEEQKIALE SESPAKVTTP APADTPAPAP AEIPAPAPAP TPADVTKDVA EEKIQNPPPE QIFDDSKALT VVEKPVEEPA PAKPASASLD RDVKLADLSK
101: EKRLSFVRAW EESEKSKAEN KAEKKIADVH AWENSKKAAV EAQLKKIEEQ LEKKKAEYAE RMKNKVAAIH KEAEERRAMI EAKRGEDVLK AEETAAKYRA
201: TGIVPKATCG CF
101: EKRLSFVRAW EESEKSKAEN KAEKKIADVH AWENSKKAAV EAQLKKIEEQ LEKKKAEYAE RMKNKVAAIH KEAEERRAMI EAKRGEDVLK AEETAAKYRA
201: TGIVPKATCG CF
Arabidopsis Description
Uncharacterized protein At3g61260 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2D8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.