CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74768
CDX93424
CDY06318
CDY07801
CDY18898
CDY20630
CDY20948
CDY27356
CDY34890
CDY37068
CDY37975
CDY66046

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45820.1	CDX93424	AT1G10470.1	9771897
AT2G45820.1	CDY07801	AT1G10470.1	9771897
AT2G45820.1	CDY20630	AT1G10470.1	9771897
AT2G45820.1	CDY20948	AT1G10470.1	9771897
AT2G45820.1	CDY34890	AT1G10470.1	9771897
AT2G45820.1	CDY37975	AT1G10470.1	9771897
AT2G45820.1	CDY66046	AT1G10470.1	9771897
AT2G45820.1	CDX74768	AT2G45820.1	21798944
AT2G45820.1	CDY06318	AT2G45820.1	21798944
AT2G45820.1	CDY18898	AT2G45820.1	21798944
AT2G45820.1	CDY27356	AT2G45820.1	21798944
AT2G45820.1	CDY37068	AT2G45820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06318	Canola	cytosol, nucleus, plastid	98.97	98.97
Bra039311.1-P	Field mustard	cytosol, nucleus, plastid	97.95	97.95
CDY27356	Canola	nucleus	92.31	92.31
CDX74768	Canola	nucleus	85.64	86.98
CDY18898	Canola	cytosol	84.62	85.94
AT2G45820.1	Thale cress	cytosol	81.03	83.16
PGSC0003DMT400055730	Potato	cytosol	18.46	69.23
CDY69344	Canola	cytosol	44.1	66.15
CDX71754	Canola	cytosol, mitochondrion, nucleus	59.49	64.44
CDY05883	Canola	mitochondrion	39.49	64.17
KRH48177	Soybean	plasma membrane	62.56	61.62
KRH00705	Soybean	cytosol, nucleus, plastid	57.44	61.2
CDY48933	Canola	cytosol	60.51	60.82
VIT_15s0046g03180.t01	Wine grape	nucleus	60.0	59.69
PGSC0003DMT400000462	Potato	cytosol, mitochondrion, nucleus, plastid	52.82	59.2
CDY71834	Canola	cytosol, mitochondrion, nucleus	52.82	58.52
GSMUA_Achr1P00240_001	Banana	nucleus	57.44	58.33
KRH40491	Soybean	cytosol	54.36	57.92
Solyc01g094370.2.1	Tomato	plastid	51.28	57.47
KRH65100	Soybean	cytosol	58.46	57.0
Solyc05g048820.2.1	Tomato	nucleus, plastid	44.62	56.86
Zm00001d002842_P001	Maize	extracellular, mitochondrion, plasma membrane	57.95	56.78
GSMUA_Achr1P03030_001	Banana	nucleus	54.87	56.32
TraesCS2A01G369800.1	Wheat	nucleus	60.0	55.71
GSMUA_Achr11P...	Banana	nucleus	55.9	55.61
GSMUA_Achr4P25330_001	Banana	nucleus	50.26	55.06
EES12557	Sorghum	cytosol	58.97	54.25
TraesCS2B01G386900.1	Wheat	nucleus	58.97	53.74
TraesCS6B01G265700.2	Wheat	cytosol	52.31	53.4
TraesCS2D01G366300.2	Wheat	nucleus	58.46	53.27
CDX87157	Canola	cytosol	52.82	53.09
TraesCS6D01G219800.1	Wheat	cytosol	51.79	52.88
TraesCS6A01G237200.2	Wheat	cytosol	51.79	52.33
TraesCS1D01G164300.1	Wheat	nucleus	46.67	51.41
TraesCS1A01G174700.1	Wheat	nucleus	46.67	51.41
Zm00001d025932_P003	Maize	mitochondrion	52.31	51.0
CDX88048	Canola	nucleus	53.33	50.73
KXG31130	Sorghum	cytosol	50.77	50.51
Os03t0111200-01	Rice	nucleus	45.13	50.29
GSMUA_Achr5P12250_001	Banana	cytosol	47.69	50.0
EER92997	Sorghum	nucleus	46.15	49.72
Zm00001d017386_P001	Maize	cytosol	47.18	49.46
TraesCS5A01G554600.1	Wheat	cytosol	44.62	49.15
TraesCS4B01G393000.1	Wheat	cytosol	44.1	49.14
TraesCSU01G033600.1	Wheat	cytosol	44.1	49.14
HORVU4Hr1G089540.2	Barley	cytosol	44.1	49.14
EER93970	Sorghum	nucleus	38.97	49.03
Os04t0533300-02	Rice	extracellular, plasma membrane	51.79	48.33
HORVU6Hr1G060700.5	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	45.64	46.6
Zm00001d027330_P001	Maize	extracellular, mitochondrion, plasma membrane	43.59	46.45
Solyc10g017540.2.1	Tomato	nucleus	43.59	44.97
Os02t0642200-01	Rice	plasma membrane	46.67	44.83
PGSC0003DMT400026584	Potato	nucleus	43.59	44.5
HORVU1Hr1G045920.1	Barley	nucleus	22.05	40.57
GSMUA_Achr5P10760_001	Banana	cytosol	50.77	36.94
Os10t0503800-01	Rice	nucleus	24.1	35.34
HORVU2Hr1G091680.3	Barley	cytosol, plasma membrane	51.79	33.67
CDY66598	Canola	cytosol, nucleus, plastid	16.92	31.73
CDX74343	Canola	nucleus	18.97	28.03
CDX91900	Canola	cytosol, mitochondrion, nucleus	18.46	27.27

Protein Annotations

EnsemblPlants:CDY37068	EnsemblPlantsGene:GSBRNA2T00063277001	InterPro:Remorin_C	InterPro:Remorin_N	ncoils:Coil	PANTHER:PTHR31775
PANTHER:PTHR31775:SF2	PFAM:PF03763	PFAM:PF03766	ProteinID:CDY37068	ProteinID:CDY37068.1	SEG:seg
UniParc:UPI0004EEAEF2	UniProt:A0A078HJQ0	MapMan:35.1	:	:	:

Description

BnaA04g26460DBnaA04g26460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJQ0]

Coordinates

chrLK032390:-:270293..271964

Molecular Weight (calculated)

21511.6 Da

IEP (calculated)

5.992

GRAVY (calculated)

-0.879

Length

195 amino acids

Sequence
(BLAST)

001: MAEEQKTTKV DVESPAVSAP EKEPAPAPVE ASTEVAEEKV HDPPPPVESK ALAVVEKPIE EPTPKKSSSG SIDRDVKLAD LEKEKKTSFI KAWEESEKSK
101: AENKAQKKVS DVLAWENSQK AAVEAQLRKI EEKLEKKKAE YGEKMKNKVA AIHKEAEEKR AMVEAKRGEE LLKAEEMAAK YRATGIVPKA TCGCF

Best Arabidopsis Sequence Match ( AT2G45820.1 )
(BLAST)

001: MAEEQKTSKV DVESPAVLAP AKEPTPAPVE VADEKIHNPP PVESKALAVV EKPIEEHTPK KASSGSADRD VILADLEKEK KTSFIKAWEE SEKSKAENRA
101: QKKISDVHAW ENSKKAAVEA QLRKIEEKLE KKKAQYGEKM KNKVAAIHKL AEEKRAMVEA KKGEELLKAE EMGAKYRATG VVPKATCGCF

Arabidopsis Description

DBPRemorin [Source:UniProtKB/Swiss-Prot;Acc:O80837]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.