Factsheet for Zm00001d027330_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, extracellular

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 20408568
plasma membrane: 23353019
mitochondrion: 27297264

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002842_P001
Zm00001d017386_P001
Zm00001d025932_P003
Zm00001d027330_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45820.1	Zm00001d002842_P001	AT2G45820.1	21798944
AT2G45820.1	Zm00001d017386_P001	AT2G45820.1	21798944
AT2G45820.1	Zm00001d025932_P003	AT2G45820.1	21798944
AT2G45820.1	Zm00001d027330_P001	AT2G45820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92997	Sorghum	nucleus	80.87	81.77
Os03t0111200-01	Rice	nucleus	71.58	74.86
TraesCS5A01G554600.1	Wheat	cytosol	68.31	70.62
TraesCSU01G033600.1	Wheat	cytosol	67.21	70.29
HORVU4Hr1G089540.2	Barley	cytosol	67.21	70.29
TraesCS4B01G393000.1	Wheat	cytosol	65.03	68.0
PGSC0003DMT400055730	Potato	cytosol	15.3	53.85
Zm00001d002842_P001	Maize	extracellular, mitochondrion, plasma membrane	55.19	50.75
GSMUA_Achr1P03030_001	Banana	nucleus	51.91	50.0
GSMUA_Achr11P...	Banana	nucleus	51.91	48.47
GSMUA_Achr4P25330_001	Banana	nucleus	46.99	48.31
GSMUA_Achr1P00240_001	Banana	nucleus	50.27	47.92
CDX71754	Canola	cytosol, mitochondrion, nucleus	45.36	46.11
VIT_15s0046g03180.t01	Wine grape	nucleus	49.18	45.92
Zm00001d025932_P003	Maize	mitochondrion	49.73	45.5
KRH48177	Soybean	plasma membrane	49.18	45.45
PGSC0003DMT400000462	Potato	cytosol, mitochondrion, nucleus, plastid	43.17	45.4
Solyc01g094370.2.1	Tomato	plastid	43.17	45.4
KRH00705	Soybean	cytosol, nucleus, plastid	45.36	45.36
Zm00001d017386_P001	Maize	cytosol	45.9	45.16
CDX74768	Canola	nucleus	46.99	44.79
Bra004940.1-P	Field mustard	nucleus	46.99	44.79
GSMUA_Achr5P12250_001	Banana	cytosol	45.36	44.62
CDY27356	Canola	nucleus	47.54	44.62
Bra007589.1-P	Field mustard	nucleus	46.45	43.81
CDY48933	Canola	cytosol	46.45	43.81
KRH40491	Soybean	cytosol	43.72	43.72
CDY37068	Canola	nucleus	46.45	43.59
Bra039311.1-P	Field mustard	cytosol, nucleus, plastid	46.45	43.59
CDY06318	Canola	cytosol, nucleus, plastid	46.45	43.59
CDY18898	Canola	cytosol	45.36	43.23
Solyc05g048820.2.1	Tomato	nucleus, plastid	36.07	43.14
KRH65100	Soybean	cytosol	45.9	42.0
AT2G45820.1	Thale cress	cytosol	43.17	41.58
AT3G61260.1	Thale cress	nucleus	47.54	41.04
Solyc10g017540.2.1	Tomato	nucleus	36.61	35.45
PGSC0003DMT400026584	Potato	nucleus	36.61	35.08
GSMUA_Achr5P10760_001	Banana	cytosol	46.45	31.72

Protein Annotations

EnsemblPlants:Zm00001d027330_P001	EnsemblPlants:Zm00001d027330_T001	EnsemblPlantsGene:Zm00001d027330	InterPro:Remorin_C	InterPro:Remorin_N	ncoils:Coil
PANTHER:PTHR31775	PANTHER:PTHR31775:SF6	PFAM:PF03763	PFAM:PF03766	ProteinID:ONL92810.1	ProteinID:ONL92811.1
SEG:seg	UniParc:UPI0002213E5F	UniProt:A0A1D6JKW7	MapMan:35.1	:	:

Description

Remorin

Coordinates

chr1:+:3051538..3052986

Molecular Weight (calculated)

20045.1 Da

IEP (calculated)

9.776

GRAVY (calculated)

-0.584

Length

183 amino acids

Sequence
(BLAST)

001: MTAAEVEAAK DIAEEKAVVP LPPSPAKPAD DDSKAIVALV VKDAAAGKPS TAIIGGSTER DAYLAKIVSE KRLSLITAWE ESQKARADNR AAKKLAFITS
101: WENAKKAEME AELRKIEEQL QKKKAAYEEK LKNKLAMLHR TAEERRAQTE ARRGEETILA EEMAAKYRAK GEGPTKLFGL LKA

Best Arabidopsis Sequence Match ( AT3G48940.1 )
(BLAST)

001: MTLEEQKKVI MPEAVASEPS PPSKEEKSDD SKAIVLVVAA KEPTEDKKVG SVHRDAVLVR LEQDKRISLI KAWEEAEKSK VENKAQKKIS SVGAWENSKK
101: ASVEAELKKI EEQLNKKKAH YTEQMKNKIA QIHKEAEEKR AMTEAKRGED VLKAEEMAAK YRATGTAPTK LFGFF

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q9SMT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.