Factsheet for Solyc01g094370.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
extracellular 1
cytosol 1
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
plastid: 26371478
nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g094370.2.1
Solyc05g006420.2.1
Solyc05g048820.2.1
Solyc10g017540.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45820.1	Solyc05g006420.2.1	AT1G10470.1	9771897
AT2G45820.1	Solyc01g094370.2.1	AT2G45820.1	21798944
AT2G45820.1	Solyc05g048820.2.1	AT2G45820.1	21798944
AT2G45820.1	Solyc10g017540.2.1	AT2G45820.1	21798944
AT3G61260.1	Solyc05g006420.2.1	AT1G10470.1	9771897

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000462	Potato	cytosol, mitochondrion, nucleus, plastid	93.68	93.68
Solyc05g048820.2.1	Tomato	nucleus, plastid	53.45	60.78
Solyc06g035910.1.1	Tomato	cytosol, mitochondrion, nucleus	24.14	58.33
Solyc10g017540.2.1	Tomato	nucleus	61.49	56.61
CDX71754	Canola	cytosol, mitochondrion, nucleus	55.17	53.33
Zm00001d002842_P001	Maize	extracellular, mitochondrion, plasma membrane	60.34	52.76
VIT_15s0046g03180.t01	Wine grape	nucleus	58.62	52.04
KRH00705	Soybean	cytosol, nucleus, plastid	54.6	51.91
CDY06318	Canola	cytosol, nucleus, plastid	58.05	51.79
Bra039311.1-P	Field mustard	cytosol, nucleus, plastid	57.47	51.28
CDY37068	Canola	nucleus	57.47	51.28
AT2G45820.1	Thale cress	cytosol	55.75	51.05
Bra004940.1-P	Field mustard	nucleus	56.32	51.04
CDX74768	Canola	nucleus	56.32	51.04
CDY27356	Canola	nucleus	56.9	50.77
GSMUA_Achr5P12250_001	Banana	cytosol	54.02	50.54
CDY18898	Canola	cytosol	55.75	50.52
Solyc03g025850.2.1	Tomato	nucleus	56.9	50.25
CDY48933	Canola	cytosol	55.75	50.0
Bra007589.1-P	Field mustard	nucleus	55.75	50.0
KRH48177	Soybean	plasma membrane	56.9	50.0
Zm00001d025932_P003	Maize	mitochondrion	56.9	49.5
KRH65100	Soybean	cytosol	56.9	49.5
Solyc06g035920.2.1	Tomato	nucleus	52.3	49.19
KRH40491	Soybean	cytosol	51.72	49.18
EER93970	Sorghum	nucleus	43.68	49.03
TraesCS1A01G174700.1	Wheat	nucleus	49.43	48.59
TraesCS1D01G164300.1	Wheat	nucleus	49.43	48.59
EES12557	Sorghum	cytosol	59.2	48.58
TraesCS6D01G219800.1	Wheat	cytosol	52.87	48.17
TraesCSU01G033600.1	Wheat	cytosol	48.28	48.0
TraesCS4B01G393000.1	Wheat	cytosol	47.7	47.43
HORVU4Hr1G089540.2	Barley	cytosol	47.7	47.43
GSMUA_Achr1P00240_001	Banana	nucleus	52.3	47.4
TraesCS6B01G265700.2	Wheat	cytosol	51.72	47.12
GSMUA_Achr11P...	Banana	nucleus	52.87	46.94
TraesCS5A01G554600.1	Wheat	cytosol	47.7	46.89
GSMUA_Achr1P03030_001	Banana	nucleus	51.15	46.84
TraesCS2A01G369800.1	Wheat	nucleus	56.32	46.67
HORVU6Hr1G060700.5	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	51.15	46.6
KXG31130	Sorghum	cytosol	52.3	46.43
Os04t0533300-02	Rice	extracellular, plasma membrane	55.75	46.41
Os02t0642200-01	Rice	plasma membrane	54.02	46.31
TraesCS6A01G237200.2	Wheat	cytosol	51.15	46.11
TraesCS2B01G386900.1	Wheat	nucleus	56.32	45.79
TraesCS2D01G366300.2	Wheat	nucleus	56.32	45.79
AT3G61260.1	Thale cress	nucleus	55.75	45.75
Os03t0111200-01	Rice	nucleus	45.98	45.71
GSMUA_Achr4P25330_001	Banana	nucleus	45.4	44.38
EER92997	Sorghum	nucleus	45.98	44.2
Zm00001d017386_P001	Maize	cytosol	47.13	44.09
Zm00001d027330_P001	Maize	extracellular, mitochondrion, plasma membrane	45.4	43.17
HORVU1Hr1G045920.1	Barley	nucleus	25.86	42.45
Os10t0503800-01	Rice	nucleus	27.01	35.34
HORVU2Hr1G091680.3	Barley	cytosol, plasma membrane	52.87	30.67
GSMUA_Achr5P10760_001	Banana	cytosol	47.13	30.6
Solyc06g035900.1.1	Tomato	cytosol	14.37	28.74

Protein Annotations

EMBL:AF123266	EnsemblPlants:Solyc01g094370.2.1	EnsemblPlantsGene:Solyc01g094370.2	InterPro:Remorin_C	InterPro:Remorin_N	ncoils:Coil
PANTHER:PTHR31775	PANTHER:PTHR31775:SF2	PFAM:PF03763	PFAM:PF03766	SEG:seg	UniParc:UPI00000A3306
UniProt:Q9XEX9	MapMan:35.1	:	:	:	:

Description

Remorin 2 [Source:UniProtKB/TrEMBL;Acc:Q9XEX9]

Coordinates

chr1:-:85880784..85884625

Molecular Weight (calculated)

19169.8 Da

IEP (calculated)

9.572

GRAVY (calculated)

-0.949

Length

174 amino acids

Sequence
(BLAST)

001: MAEATAVAAQ PQPESTTPPP MAKSDDSKAI ATLPPTKPDS STKKSSKGSF DRDVALAHLE EEKRNSYIKA WEESEKSKVN NKAEKKLSSV GTWENTKKAN
101: IEAKLKKLEE QLEQKKAEYA EKIKNKVAAV HMEAEEKRAM VEARRGEELL KAEEIAAKYR ATGQAPKKIG CLGC

Best Arabidopsis Sequence Match ( AT5G23750.3 )
(BLAST)

001: MTTRNRTSLP NISSSVSSNK NIVVPNIMAE EEPKKVTETV SEPTPTPEVP VEKPAAAADV APQEKPVAPP PVLPSPAPAE EKQEDSKAIV PVVPKEVEEE
101: KKEGSVNRDA VLARVETEKR MSLIKAWEEA EKCKVENKAE KKLSSIGSWE NNKKAAVEAE LKKMEEQLEK KKAEYVEQMK NKIAQIHKEA EEKRAMIEAK
201: RGEEILKAEE LAAKYRATGT APKKLFGCM

Arabidopsis Description

Remorin family protein [Source:TAIR;Acc:AT5G23750]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.