Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G386900.1 | Wheat | nucleus | 95.24 | 93.46 |
| TraesCS2D01G366300.2 | Wheat | nucleus | 95.24 | 93.46 |
| EES12557 | Sorghum | cytosol | 73.81 | 73.11 |
| PGSC0003DMT400055730 | Potato | cytosol | 17.62 | 71.15 |
| Zm00001d002842_P001 | Maize | extracellular, mitochondrion, plasma membrane | 66.67 | 70.35 |
| Zm00001d025932_P003 | Maize | mitochondrion | 63.33 | 66.5 |
| TraesCS6A01G237200.2 | Wheat | cytosol | 56.67 | 61.66 |
| Os04t0533300-02 | Rice | extracellular, plasma membrane | 60.95 | 61.24 |
| GSMUA_Achr1P00240_001 | Banana | nucleus | 55.71 | 60.94 |
| CDY27356 | Canola | nucleus | 56.19 | 60.51 |
| Bra004940.1-P | Field mustard | nucleus | 55.24 | 60.42 |
| CDX74768 | Canola | nucleus | 55.24 | 60.42 |
| CDY37068 | Canola | nucleus | 55.71 | 60.0 |
| CDY06318 | Canola | cytosol, nucleus, plastid | 55.71 | 60.0 |
| Bra039311.1-P | Field mustard | cytosol, nucleus, plastid | 55.24 | 59.49 |
| CDY18898 | Canola | cytosol | 54.29 | 59.38 |
| GSMUA_Achr1P03030_001 | Banana | nucleus | 53.33 | 58.95 |
| GSMUA_Achr11P... | Banana | nucleus | 54.29 | 58.16 |
| CDX71754 | Canola | cytosol, mitochondrion, nucleus | 49.52 | 57.78 |
| AT2G45820.1 | Thale cress | cytosol | 51.9 | 57.37 |
| Bra007589.1-P | Field mustard | nucleus | 52.86 | 57.22 |
| CDY48933 | Canola | cytosol | 52.86 | 57.22 |
| KRH48177 | Soybean | plasma membrane | 53.33 | 56.57 |
| GSMUA_Achr5P12250_001 | Banana | cytosol | 50.0 | 56.45 |
| Solyc01g094370.2.1 | Tomato | plastid | 46.67 | 56.32 |
| VIT_15s0046g03180.t01 | Wine grape | nucleus | 52.38 | 56.12 |
| TraesCS5A01G554600.1 | Wheat | cytosol | 47.14 | 55.93 |
| PGSC0003DMT400000462 | Potato | cytosol, mitochondrion, nucleus, plastid | 46.19 | 55.75 |
| KRH00705 | Soybean | cytosol, nucleus, plastid | 47.62 | 54.64 |
| TraesCS1A01G174700.1 | Wheat | nucleus | 45.71 | 54.24 |
| GSMUA_Achr4P25330_001 | Banana | nucleus | 45.71 | 53.93 |
| HORVU2Hr1G091680.3 | Barley | cytosol, plasma membrane | 76.67 | 53.67 |
| Solyc05g048820.2.1 | Tomato | nucleus, plastid | 39.05 | 53.59 |
| KRH40491 | Soybean | cytosol | 46.67 | 53.55 |
| KRH65100 | Soybean | cytosol | 50.95 | 53.5 |
| AT3G61260.1 | Thale cress | nucleus | 52.86 | 52.36 |
| TraesCS6A01G403500.1 | Wheat | nucleus | 38.57 | 47.37 |
| PGSC0003DMT400026584 | Potato | nucleus | 42.38 | 46.6 |
| Solyc10g017540.2.1 | Tomato | nucleus | 40.0 | 44.44 |
| GSMUA_Achr5P10760_001 | Banana | cytosol | 51.9 | 40.67 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G369800.1 | EnsemblPlantsGene:TraesCS2A01G369800 | InterPro:Remorin_C | InterPro:Remorin_N | ncoils:Coil | PANTHER:PTHR31775 |
| PANTHER:PTHR31775:SF13 | PFAM:PF03763 | PFAM:PF03766 | SEG:seg | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr2A:+:612418730..612422244
Molecular Weight (calculated)
22954.2 Da
IEP (calculated)
4.986
GRAVY (calculated)
-0.903
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAEEPKKVE VEAAPEPEAV PAAEPEAPAK DVTEEKAVIP APEPAAEEEK PPADDSKALV VVEKVADEPV AEKPTDEKAA HGGSNDRDLA LARVESEKRN
101: SLIKAWEENE KTKAENKATK KVSAILSWEN TKKANIEAQL KKIEEQLEKK KAEYAEKMKN KAAMIHKEAE EKRAMVEAKK GEELLKAEEM AAKYRATGNS
201: PKKVMGCFGA
101: SLIKAWEENE KTKAENKATK KVSAILSWEN TKKANIEAQL KKIEEQLEKK KAEYAEKMKN KAAMIHKEAE EKRAMVEAKK GEELLKAEEM AAKYRATGNS
201: PKKVMGCFGA
001: MAEEQKIALE SESPAKVTTP APADTPAPAP AEIPAPAPAP TPADVTKDVA EEKIQNPPPE QIFDDSKALT VVEKPVEEPA PAKPASASLD RDVKLADLSK
101: EKRLSFVRAW EESEKSKAEN KAEKKIADVH AWENSKKAAV EAQLKKIEEQ LEKKKAEYAE RMKNKVAAIH KEAEERRAMI EAKRGEDVLK AEETAAKYRA
201: TGIVPKATCG CF
101: EKRLSFVRAW EESEKSKAEN KAEKKIADVH AWENSKKAAV EAQLKKIEEQ LEKKKAEYAE RMKNKVAAIH KEAEERRAMI EAKRGEDVLK AEETAAKYRA
201: TGIVPKATCG CF
Arabidopsis Description
Uncharacterized protein At3g61260 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2D8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.