CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
extracellular 1
cytosol 1
plasma membrane 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99225
KRH00705
KRH40491
KRH45761
KRH48177
KRH65100
KRH69443
KRH74701

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45820.1	KRG99225	AT1G10470.1	9771897
AT2G45820.1	KRH45761	AT1G10470.1	9771897
AT2G45820.1	KRH69443	AT1G10470.1	9771897
AT2G45820.1	KRH74701	AT1G10470.1	9771897
AT2G45820.1	KRH00705	AT2G45820.1	21798944
AT2G45820.1	KRH40491	AT2G45820.1	21798944
AT2G45820.1	KRH48177	AT2G45820.1	21798944
AT2G45820.1	KRH65100	AT2G45820.1	21798944
AT3G61260.1	KRG99225	AT1G10470.1	9771897
AT3G61260.1	KRH45761	AT1G10470.1	9771897
AT3G61260.1	KRH69443	AT1G10470.1	9771897
AT3G61260.1	KRH74701	AT1G10470.1	9771897

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40491	Soybean	cytosol	83.06	83.06
PGSC0003DMT400055730	Potato	cytosol	21.86	76.92
KRH48177	Soybean	plasma membrane	67.21	62.12
KRH65100	Soybean	cytosol	66.12	60.5
Solyc05g048820.2.1	Tomato	nucleus, plastid	49.73	59.48
CDY06318	Canola	cytosol, nucleus, plastid	61.2	57.44
CDY37068	Canola	nucleus	61.2	57.44
Bra039311.1-P	Field mustard	cytosol, nucleus, plastid	60.66	56.92
CDX71754	Canola	cytosol, mitochondrion, nucleus	55.74	56.67
CDY27356	Canola	nucleus	60.11	56.41
AT2G45820.1	Thale cress	cytosol	57.92	55.79
PGSC0003DMT400000462	Potato	cytosol, mitochondrion, nucleus, plastid	53.01	55.75
Bra007589.1-P	Field mustard	nucleus	59.02	55.67
CDY48933	Canola	cytosol	58.47	55.15
Solyc01g094370.2.1	Tomato	plastid	51.91	54.6
CDX74768	Canola	nucleus	56.83	54.17
Bra004940.1-P	Field mustard	nucleus	56.83	54.17
GSMUA_Achr1P03030_001	Banana	nucleus	55.74	53.68
CDY18898	Canola	cytosol	56.28	53.65
VIT_15s0046g03180.t01	Wine grape	nucleus	57.38	53.57
KRG91502	Soybean	nucleus	57.38	53.3
Zm00001d002842_P001	Maize	extracellular, mitochondrion, plasma membrane	57.38	52.76
KRH35326	Soybean	nucleus	55.74	52.58
Os03t0111200-01	Rice	nucleus	50.27	52.57
GSMUA_Achr11P...	Banana	nucleus	56.28	52.55
GSMUA_Achr4P25330_001	Banana	nucleus	50.27	51.69
GSMUA_Achr1P00240_001	Banana	nucleus	54.1	51.56
TraesCSU01G033600.1	Wheat	cytosol	49.18	51.43
HORVU4Hr1G089540.2	Barley	cytosol	48.63	50.86
TraesCS5A01G554600.1	Wheat	cytosol	48.63	50.28
TraesCS1A01G174700.1	Wheat	nucleus	48.63	50.28
TraesCS1D01G164300.1	Wheat	nucleus	48.63	50.28
AT3G61260.1	Thale cress	nucleus	57.92	50.0
KRH38487	Soybean	nucleus	55.74	49.51
EES12557	Sorghum	cytosol	56.83	49.06
Zm00001d025932_P003	Maize	mitochondrion	53.55	49.0
EER92997	Sorghum	nucleus	48.09	48.62
TraesCS4B01G393000.1	Wheat	cytosol	46.45	48.57
KRH09020	Soybean	nucleus	54.1	48.29
Zm00001d017386_P001	Maize	cytosol	48.63	47.85
TraesCS6D01G219800.1	Wheat	cytosol	49.73	47.64
TraesCS2A01G369800.1	Wheat	nucleus	54.64	47.62
TraesCS6B01G265700.2	Wheat	cytosol	49.18	47.12
EER93970	Sorghum	nucleus	39.89	47.1
KXG31130	Sorghum	cytosol	50.27	46.94
GSMUA_Achr5P12250_001	Banana	cytosol	47.54	46.77
TraesCS2B01G386900.1	Wheat	nucleus	54.64	46.73
TraesCS2D01G366300.2	Wheat	nucleus	54.64	46.73
TraesCS6A01G237200.2	Wheat	cytosol	49.18	46.63
Os02t0642200-01	Rice	plasma membrane	51.37	46.31
HORVU1Hr1G045920.1	Barley	nucleus	26.78	46.23
Os04t0533300-02	Rice	extracellular, plasma membrane	51.91	45.45
Zm00001d027330_P001	Maize	extracellular, mitochondrion, plasma membrane	45.36	45.36
PGSC0003DMT400026584	Potato	nucleus	45.9	43.98
HORVU6Hr1G060700.5	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	45.9	43.98
KRH77513	Soybean	cytosol, nucleus, plastid	45.36	43.46
Solyc10g017540.2.1	Tomato	nucleus	44.81	43.39
KRH59848	Soybean	extracellular	40.44	40.44
KRH41149	Soybean	extracellular	42.62	40.21
GSMUA_Achr5P10760_001	Banana	cytosol	54.1	36.94
KRH27955	Soybean	nucleus	42.08	35.81
Os10t0503800-01	Rice	nucleus	24.59	33.83
HORVU2Hr1G091680.3	Barley	cytosol, plasma membrane	51.37	31.33

Protein Annotations

EMBL:ACUP02011467	EMBL:BT089408	EnsemblPlants:KRH00705	EnsemblPlantsGene:GLYMA_18G230500	EntrezGene:100305679	InterPro:Remorin_C
InterPro:Remorin_N	ncoils:Coil	PANTHER:PTHR31775	PANTHER:PTHR31775:SF2	PFAM:PF03763	PFAM:PF03766
ProteinID:KRH00705	ProteinID:KRH00705.1	SEG:seg	UniParc:UPI0001B15A21	UniProt:C6SW65	MapMan:35.1

Description

hypothetical protein

Coordinates

chr18:+:51926771..51931690

Molecular Weight (calculated)

20081.9 Da

IEP (calculated)

9.301

GRAVY (calculated)

-0.803

Length

183 amino acids

Sequence
(BLAST)

001: MAELQSKSET APAPAPVVAE VPSNDAVAKK ASETGESKAI VSVSEKTPVP ANKQSSRGSI DRDIALAEVE KEKKLSYVKA WEESEKAKAE NRAQKHLSAI
101: AAWENSKKAA LEAELKKLEE QLEKKKAEYG EKMKNKVALV HKEAEEKRAM IEAKRGEEIL QTEEMAAKYR ATGTTPKKTI GCF

Best Arabidopsis Sequence Match ( AT3G61260.1 )
(BLAST)

001: MAEEQKIALE SESPAKVTTP APADTPAPAP AEIPAPAPAP TPADVTKDVA EEKIQNPPPE QIFDDSKALT VVEKPVEEPA PAKPASASLD RDVKLADLSK
101: EKRLSFVRAW EESEKSKAEN KAEKKIADVH AWENSKKAAV EAQLKKIEEQ LEKKKAEYAE RMKNKVAAIH KEAEERRAMI EAKRGEDVLK AEETAAKYRA
201: TGIVPKATCG CF

Arabidopsis Description

Uncharacterized protein At3g61260 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2D8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.