Factsheet for Bra007589.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018439.1-P
Bra019932.1-P
Bra031714.1-P
Bra036963.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61260.1	Bra018439.1-P	AT1G10470.1	9771897
AT3G61260.1	Bra019932.1-P	AT1G10470.1	9771897
AT3G61260.1	Bra031714.1-P	AT1G10470.1	9771897
AT3G61260.1	Bra036963.1-P	AT1G10470.1	9771897

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48933	Canola	cytosol	99.48	99.48
PGSC0003DMT400055730	Potato	cytosol	17.01	63.46
AT3G61260.1	Thale cress	nucleus	68.04	62.26
Bra039311.1-P	Field mustard	cytosol, nucleus, plastid	60.82	60.51
Bra004940.1-P	Field mustard	nucleus	58.76	59.38
KRH00705	Soybean	cytosol, nucleus, plastid	55.67	59.02
Zm00001d002842_P001	Maize	extracellular, mitochondrion, plasma membrane	57.73	56.28
Solyc05g048820.2.1	Tomato	nucleus, plastid	44.33	56.21
Solyc01g094370.2.1	Tomato	plastid	50.0	55.75
KRH40491	Soybean	cytosol	52.58	55.74
KRH48177	Soybean	plasma membrane	56.7	55.56
Bra018025.1-P	Field mustard	cytosol, mitochondrion, nucleus	50.0	55.43
EES12557	Sorghum	cytosol	60.31	55.19
PGSC0003DMT400000462	Potato	cytosol, mitochondrion, nucleus, plastid	49.48	55.17
VIT_15s0046g03180.t01	Wine grape	nucleus	55.67	55.1
GSMUA_Achr1P03030_001	Banana	nucleus	53.09	54.21
KRH65100	Soybean	cytosol	55.15	53.5
TraesCS2A01G369800.1	Wheat	nucleus	57.22	52.86
GSMUA_Achr1P00240_001	Banana	nucleus	51.55	52.08
GSMUA_Achr4P25330_001	Banana	nucleus	47.42	51.69
GSMUA_Achr11P...	Banana	nucleus	52.06	51.53
TraesCS2D01G366300.2	Wheat	nucleus	56.7	51.4
Zm00001d025932_P003	Maize	mitochondrion	52.58	51.0
TraesCS2B01G386900.1	Wheat	nucleus	56.19	50.93
Bra026483.1-P	Field mustard	nucleus	51.03	50.25
TraesCS6A01G237200.2	Wheat	cytosol	49.48	49.74
TraesCS6B01G265700.2	Wheat	cytosol	48.97	49.74
EER92997	Sorghum	nucleus	46.39	49.72
Os03t0111200-01	Rice	nucleus	44.85	49.71
GSMUA_Achr5P12250_001	Banana	cytosol	46.91	48.92
TraesCS1D01G164300.1	Wheat	nucleus	44.33	48.59
TraesCS1A01G174700.1	Wheat	nucleus	44.33	48.59
TraesCS6D01G219800.1	Wheat	cytosol	47.42	48.17
Bra009707.1-P	Field mustard	nucleus	50.0	47.32
Zm00001d017386_P001	Maize	cytosol	45.36	47.31
KXG31130	Sorghum	cytosol	47.42	46.94
TraesCS5A01G554600.1	Wheat	cytosol	42.78	46.89
TraesCS4B01G393000.1	Wheat	cytosol	42.27	46.86
Zm00001d027330_P001	Maize	extracellular, mitochondrion, plasma membrane	43.81	46.45
HORVU4Hr1G089540.2	Barley	cytosol	41.75	46.29
TraesCSU01G033600.1	Wheat	cytosol	41.75	46.29
HORVU6Hr1G060700.5	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	44.85	45.55
EER93970	Sorghum	nucleus	36.08	45.16
PGSC0003DMT400026584	Potato	nucleus	43.3	43.98
Solyc10g017540.2.1	Tomato	nucleus	42.78	43.92
Os02t0642200-01	Rice	plasma membrane	45.36	43.35
Os04t0533300-02	Rice	extracellular, plasma membrane	46.39	43.06
HORVU1Hr1G045920.1	Barley	nucleus	22.68	41.51
Os10t0503800-01	Rice	nucleus	27.32	39.85
GSMUA_Achr5P10760_001	Banana	cytosol	50.52	36.57
HORVU2Hr1G091680.3	Barley	cytosol, plasma membrane	50.0	32.33
Bra027633.1-P	Field mustard	cytosol	26.8	32.3
Bra000964.1-P	Field mustard	cytosol, mitochondrion, nucleus	17.01	25.0

Protein Annotations

EnsemblPlants:Bra007589.1	EnsemblPlants:Bra007589.1-P	EnsemblPlantsGene:Bra007589	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005886	GO:GO:0009506	GO:GO:0016020	InterPro:Remorin_C
InterPro:Remorin_N	ncoils:Coil	PANTHER:PTHR31775	PANTHER:PTHR31775:SF2	PFAM:PF03763	PFAM:PF03766
SEG:seg	UniParc:UPI000254294A	UniProt:M4CTP5	MapMan:35.1	:	:

Description

AT3G61260 (E=2e-057) | DNA-binding family protein / remorin family protein

Coordinates

chrA09:-:29913741..29914814

Molecular Weight (calculated)

20966.9 Da

IEP (calculated)

5.556

GRAVY (calculated)

-0.731

Length

194 amino acids

Sequence
(BLAST)

001: MAEEQKITLD TAPPAPAETL ALAPAPAPAP AETPAPAPAP EKTSDDSKAL AIVEKPVEPD APKKSSSSGS QDRDVKLADL SKEKTLAYVK AWEDSEKSKA
101: ENKAEKKISD ILAWENSKKA AVEAQLKKIE EQLENKKAEY AEKMKNKVAA IHKEAEERRA MIEAKRGEDV LKAEEMAAKF RATGIVPKAT CGCF

Best Arabidopsis Sequence Match ( AT3G61260.1 )
(BLAST)

001: MAEEQKIALE SESPAKVTTP APADTPAPAP AEIPAPAPAP TPADVTKDVA EEKIQNPPPE QIFDDSKALT VVEKPVEEPA PAKPASASLD RDVKLADLSK
101: EKRLSFVRAW EESEKSKAEN KAEKKIADVH AWENSKKAAV EAQLKKIEEQ LEKKKAEYAE RMKNKVAAIH KEAEERRAMI EAKRGEDVLK AEETAAKYRA
201: TGIVPKATCG CF

Arabidopsis Description

Uncharacterized protein At3g61260 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2D8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.