Factsheet for Bra026483.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69344	Canola	cytosol	64.47	97.69
CDX87157	Canola	cytosol	86.29	87.63
Bra009707.1-P	Field mustard	nucleus	80.2	77.07
Bra018025.1-P	Field mustard	cytosol, mitochondrion, nucleus	59.39	66.86
AT5G23750.3	Thale cress	cytosol, mitochondrion, nucleus, plastid	77.16	66.38
GSMUA_Achr7P04410_001	Banana	plasma membrane	54.31	62.57
Solyc03g025850.2.1	Tomato	nucleus	61.93	61.93
VIT_16s0050g00080.t01	Wine grape	nucleus	61.42	61.73
PGSC0003DMT400037192	Potato	cytosol	61.42	61.11
KRG91502	Soybean	nucleus	58.38	58.38
KRH35326	Soybean	nucleus	57.36	58.25
Solyc06g035920.2.1	Tomato	nucleus	53.81	57.3
KRH38487	Soybean	nucleus	59.39	56.8
Solyc06g035910.1.1	Tomato	cytosol, mitochondrion, nucleus	20.3	55.56
KRH09020	Soybean	nucleus	56.85	54.63
Bra039311.1-P	Field mustard	cytosol, nucleus, plastid	53.81	54.36
Bra004940.1-P	Field mustard	nucleus	52.79	54.17
Bra007589.1-P	Field mustard	nucleus	50.25	51.03
Bra027633.1-P	Field mustard	cytosol	28.93	35.4
Solyc06g035900.1.1	Tomato	cytosol	13.71	31.03
Bra000964.1-P	Field mustard	cytosol, mitochondrion, nucleus	16.75	25.0

Protein Annotations

EnsemblPlants:Bra026483.1	EnsemblPlants:Bra026483.1-P	EnsemblPlantsGene:Bra026483	InterPro:Remorin_C	InterPro:Remorin_N	ncoils:Coil
PANTHER:PTHR31775	PANTHER:PTHR31775:SF5	PFAM:PF03763	PFAM:PF03766	SEG:seg	UniParc:UPI0002546FAF
UniProt:M4ECH3	MapMan:35.1	:	:	:	:

Description

AT5G23750 (E=3e-047) | remorin family protein

Coordinates

chrA01:-:9060716..9062104

Molecular Weight (calculated)

22059.4 Da

IEP (calculated)

6.175

GRAVY (calculated)

-0.854

Length

197 amino acids

Sequence
(BLAST)

001: MAEEEPKKVT ETVNNVSEPS PSLPAPAEKA VAAPQEKPVA PPPPASVEEK REDSKALVPI VAKEVEEEKK EGSINRDAVL ARVETEKRMS LIKAWEEAEK
101: CKVENKAEKK LSSIESWENN KKAAVEAELK KIEEQLEKKK AEYVELMKNK IAQIHKQAEE KRAMIEARRG EEVLKAEELA AKYRASGTAP KKLFGFM

Best Arabidopsis Sequence Match ( AT5G23750.2 )
(BLAST)

001: MAEEEPKKVT ETVSEPTPTP EVPVEKPAAA ADVAPQEKPV APPPVLPSPA PAEEKQEDSK AIVPVVPKVE EEKKEGSVNR DAVLARVETE KRMSLIKAWE
101: EAEKCKVENK AEKKLSSIGS WENNKKAAVE AELKKMEEQL EKKKAEYVEQ MKNKIAQIHK EAEEKRAMIE AKRGEEILKA EELAAKYRAT GTAPKKLFGC
201: M

Arabidopsis Description

Remorin family protein [Source:TAIR;Acc:AT5G23750]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.