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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • plasma membrane 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra004940.1-P
Bra018439.1-P
Bra019932.1-P
Bra031714.1-P
Bra036963.1-P
Bra039311.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G45820.1 Bra018439.1-P AT1G10470.1 9771897
AT2G45820.1 Bra019932.1-P AT1G10470.1 9771897
AT2G45820.1 Bra031714.1-P AT1G10470.1 9771897
AT2G45820.1 Bra036963.1-P AT1G10470.1 9771897
AT2G45820.1 Bra004940.1-P AT2G45820.1 21798944
AT2G45820.1 Bra039311.1-P AT2G45820.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX74768 Canola nucleus 100.0 100.0
Bra039311.1-P Field mustard cytosol, nucleus, plastid 86.46 85.13
AT2G45820.1 Thale cress cytosol 79.69 80.53
PGSC0003DMT400055730 Potato cytosol 17.19 63.46
KRH48177 Soybean plasma membrane 62.5 60.61
Bra007589.1-P Field mustard nucleus 59.38 58.76
VIT_15s0046g03180.t01 Wine grape nucleus 59.38 58.16
GSMUA_Achr1P00240_001 Banana nucleus 57.81 57.81
PGSC0003DMT400000462 Potato cytosol, mitochondrion, nucleus, plastid 52.08 57.47
Solyc05g048820.2.1 Tomato nucleus, plastid 45.31 56.86
GSMUA_Achr1P03030_001 Banana nucleus 56.25 56.84
KRH00705 Soybean cytosol, nucleus, plastid 54.17 56.83
KRH65100 Soybean cytosol 58.85 56.5
Solyc01g094370.2.1 Tomato plastid 51.04 56.32
Zm00001d002842_P001 Maize extracellular, mitochondrion, plasma membrane 58.33 56.28
Bra018025.1-P Field mustard cytosol, mitochondrion, nucleus 51.04 56.0
GSMUA_Achr11P... Banana nucleus 56.77 55.61
TraesCS2A01G369800.1 Wheat nucleus 60.42 55.24
GSMUA_Achr4P25330_001 Banana nucleus 50.52 54.49
KRH40491 Soybean cytosol 51.56 54.1
TraesCS2B01G386900.1 Wheat nucleus 59.9 53.74
TraesCS2D01G366300.2 Wheat nucleus 59.38 53.27
EES12557 Sorghum cytosol 58.33 52.83
Bra026483.1-P Field mustard nucleus 54.17 52.79
TraesCS6D01G219800.1 Wheat cytosol 52.08 52.36
Os03t0111200-01 Rice nucleus 47.4 52.0
KXG31130 Sorghum cytosol 52.6 51.53
EER92997 Sorghum nucleus 47.92 50.83
TraesCS6B01G265700.2 Wheat cytosol 50.52 50.79
TraesCS6A01G237200.2 Wheat cytosol 51.04 50.78
TraesCS1A01G174700.1 Wheat nucleus 46.35 50.28
Zm00001d017386_P001 Maize cytosol 48.44 50.0
Bra009707.1-P Field mustard nucleus 53.12 49.76
TraesCS5A01G554600.1 Wheat cytosol 45.83 49.72
TraesCS1D01G164300.1 Wheat nucleus 45.83 49.72
HORVU4Hr1G089540.2 Barley cytosol 44.79 49.14
TraesCS4B01G393000.1 Wheat cytosol 44.79 49.14
TraesCSU01G033600.1 Wheat cytosol 44.79 49.14
EER93970 Sorghum nucleus 39.58 49.03
Zm00001d025932_P003 Maize mitochondrion 51.04 49.0
GSMUA_Achr5P12250_001 Banana cytosol 46.88 48.39
Zm00001d027330_P001 Maize extracellular, mitochondrion, plasma membrane 44.79 46.99
Os04t0533300-02 Rice extracellular, plasma membrane 50.0 45.93
HORVU6Hr1G060700.5 Barley cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 44.27 44.5
Os02t0642200-01 Rice plasma membrane 46.88 44.34
PGSC0003DMT400026584 Potato nucleus 43.23 43.46
Solyc10g017540.2.1 Tomato nucleus 42.71 43.39
HORVU1Hr1G045920.1 Barley nucleus 22.4 40.57
GSMUA_Achr5P10760_001 Banana cytosol 51.04 36.57
Os10t0503800-01 Rice nucleus 24.48 35.34
HORVU2Hr1G091680.3 Barley cytosol, plasma membrane 52.08 33.33
Bra027633.1-P Field mustard cytosol 26.04 31.06
Bra000964.1-P Field mustard cytosol, mitochondrion, nucleus 16.15 23.48
Protein Annotations
EnsemblPlants:Bra004940.1EnsemblPlants:Bra004940.1-PEnsemblPlantsGene:Bra004940InterPro:Remorin_CInterPro:Remorin_Nncoils:Coil
PANTHER:PTHR31775PANTHER:PTHR31775:SF2PFAM:PF03763PFAM:PF03766SEG:segUniParc:UPI00025480CE
UniProt:M4CL54MapMan:35.1::::
Description
AT2G45820 (E=6e-059) | DNA-binding protein, putative
Coordinates
chrA05:-:2575914..2577443
Molecular Weight (calculated)
21147.3 Da
IEP (calculated)
8.650
GRAVY (calculated)
-0.824
Length
192 amino acids
Sequence
(BLAST)
001: MAEEQKTTKV DVESPAVVAP VKEPTPVPVE ASKDVAEEKI HTPPPPDESK ALAVVEKPIE DPTPKKGSAD RDVILADLEK EKKSSFIKAW EESEKSKAEN
101: KAQKKISDVL AWENSKKAAT EAQLRKIEEK LEKKKAVYGE KMKNKVAAIH KQAEEKRAMV EAKKGEELLK AEETAAKYRA TGVVPKATCG CF
Best Arabidopsis Sequence Match ( AT2G45820.1 )
(BLAST)
001: MAEEQKTSKV DVESPAVLAP AKEPTPAPVE VADEKIHNPP PVESKALAVV EKPIEEHTPK KASSGSADRD VILADLEKEK KTSFIKAWEE SEKSKAENRA
101: QKKISDVHAW ENSKKAAVEA QLRKIEEKLE KKKAQYGEKM KNKVAAIHKL AEEKRAMVEA KKGEELLKAE EMGAKYRATG VVPKATCGCF
Arabidopsis Description
DBPRemorin [Source:UniProtKB/Swiss-Prot;Acc:O80837]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.