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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • plasma membrane 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus, plasma membrane
PProwler:mitochondrion
WoLF PSORT:mitochondrion
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX74343 Canola nucleus 89.39 89.39
CDX91900 Canola cytosol, mitochondrion, nucleus 68.94 68.94
AT4G00670.1 Thale cress nucleus 56.06 60.16
Os02t0824500-01 Rice cytosol 26.52 19.55
Bra039311.1-P Field mustard cytosol, nucleus, plastid 26.52 17.95
TraesCS6B01G447400.1 Wheat cytosol, mitochondrion, nucleus 23.48 17.92
TraesCS6D01G387000.1 Wheat cytosol, mitochondrion, nucleus 22.73 17.86
TraesCS6A01G403500.1 Wheat nucleus 22.73 17.54
Bra018025.1-P Field mustard cytosol, mitochondrion, nucleus 22.73 17.14
Bra007589.1-P Field mustard nucleus 25.0 17.01
Bra026483.1-P Field mustard nucleus 25.0 16.75
Bra009707.1-P Field mustard nucleus 25.76 16.59
Bra004940.1-P Field mustard nucleus 23.48 16.15
HORVU0Hr1G017760.1 Barley nucleus 21.97 15.85
OQU85995 Sorghum cytosol 21.21 14.14
Bra027633.1-P Field mustard cytosol 11.36 9.32
Protein Annotations
EnsemblPlants:Bra000964.1EnsemblPlants:Bra000964.1-PEnsemblPlantsGene:Bra000964InterPro:Remorin_Cncoils:CoilPANTHER:PTHR31775
PANTHER:PTHR31775:SF2PFAM:PF03763SEG:segUniParc:UPI0002540770UniProt:M4C9T5MapMan:35.2
Description
AT4G00670 (E=1e-027) | DNA binding
Coordinates
chrA03:+:14155192..14155680
Molecular Weight (calculated)
15248.1 Da
IEP (calculated)
9.334
GRAVY (calculated)
-1.031
Length
132 amino acids
Sequence
(BLAST)
001: MEGTKDNKGD EQVRNHYTKI LEIFQSQFLY DCCDTCLICR TEKKLLEISS WEKKQTTKIE SQLANTQRKM DSKKKEKAEK LRRNKAAVHA KAQEKKARVQ
101: TRRAQEILDA EDEAATFQAT GQIPNKSSCS CF
Best Arabidopsis Sequence Match ( AT4G00670.1 )
(BLAST)
001: MEPNIPIQRG DEQSKVIKAW KELKITKVNN KTQKKLLDIS GWEKKKTTKI ESELARIQRK MDSKKMEKSE KLRNEKAAVH AKAQKKKADV QTRRAQEILD
101: AEEAAARFQA AGKIPKKSSL SCF
Arabidopsis Description
At4g00670 [Source:UniProtKB/TrEMBL;Acc:Q6IDB4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.