Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G403500.1 | Wheat | nucleus | 85.55 | 86.55 |
| TraesCS6D01G387000.1 | Wheat | cytosol, mitochondrion, nucleus | 80.92 | 83.33 |
| HORVU0Hr1G017760.1 | Barley | nucleus | 80.35 | 75.96 |
| Os02t0824500-01 | Rice | cytosol | 60.69 | 58.66 |
| TraesCS6B01G265700.2 | Wheat | cytosol | 46.24 | 41.88 |
| TraesCS2B01G386900.1 | Wheat | nucleus | 47.98 | 38.78 |
| OQU85995 | Sorghum | cytosol | 43.93 | 38.38 |
| TraesCS4B01G393000.1 | Wheat | cytosol | 38.15 | 37.71 |
| AT4G00670.1 | Thale cress | nucleus | 20.23 | 28.46 |
| Bra000964.1-P | Field mustard | cytosol, mitochondrion, nucleus | 17.92 | 23.48 |
| CDX74343 | Canola | nucleus | 17.34 | 22.73 |
| CDX91900 | Canola | cytosol, mitochondrion, nucleus | 16.76 | 21.97 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G447400.1 | EnsemblPlantsGene:TraesCS6B01G447400 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31775 | PANTHER:PTHR31775:SF3 |
| PFAM:PF03763 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr6B:-:708009349..708010302
Molecular Weight (calculated)
19093.8 Da
IEP (calculated)
10.226
GRAVY (calculated)
-0.946
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: METQQEPTKA GAVAAPPGVA GEPAVGGRVL DNGPPAPATP TTPPGSATDR DAVLAKVEMN RKLSMVKAWE ENQKSKADNR AEHKMSSILS WENTKKAAVQ
101: AKLRTREEKL EKKKAEYAEK MRNRIAMIHK EAEEQRAAVE ARRQEEMIKC EETAAKHRSQ GTTPKKKFLT CFG
101: AKLRTREEKL EKKKAEYAEK MRNRIAMIHK EAEEQRAAVE ARRQEEMIKC EETAAKHRSQ GTTPKKKFLT CFG
001: MAEEEPKKVT ETVSEPTPTP EVPVEKPAAA ADVAPQEKPV APPPVLPSPA PAEEKQEDSK AIVPVVPKEV EEEKKEGSVN RDAVLARVET EKRMSLIKAW
101: EEAEKCKVEN KAEKKLSSIG SWENNKKAAV EAELKKMEEQ LEKKKAEYVE QMKNKIAQIH KEAEEKRAMI EAKRGEEILK AEELAAKYRA TGTAPKKLFG
201: CM
101: EEAEKCKVEN KAEKKLSSIG SWENNKKAAV EAELKKMEEQ LEKKKAEYVE QMKNKIAQIH KEAEEKRAMI EAKRGEEILK AEELAAKYRA TGTAPKKLFG
201: CM
Arabidopsis Description
Remorin family protein [Source:TAIR;Acc:AT5G23750]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.