Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74343 | Canola | nucleus | 60.98 | 56.82 |
| Bra000964.1-P | Field mustard | cytosol, mitochondrion, nucleus | 60.16 | 56.06 |
| CDX91900 | Canola | cytosol, mitochondrion, nucleus | 59.35 | 55.3 |
| Os02t0824500-01 | Rice | cytosol | 32.52 | 22.35 |
| TraesCS6B01G447400.1 | Wheat | cytosol, mitochondrion, nucleus | 28.46 | 20.23 |
| AT3G48940.1 | Thale cress | nucleus | 28.46 | 20.0 |
| TraesCS6D01G387000.1 | Wheat | cytosol, mitochondrion, nucleus | 26.83 | 19.64 |
| TraesCS6A01G403500.1 | Wheat | nucleus | 26.83 | 19.3 |
| HORVU0Hr1G017760.1 | Barley | nucleus | 27.64 | 18.58 |
| AT2G45820.1 | Thale cress | cytosol | 28.46 | 18.42 |
| AT5G23750.3 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 30.89 | 16.59 |
| OQU85995 | Sorghum | cytosol | 25.2 | 15.66 |
| AT3G61260.1 | Thale cress | nucleus | 26.02 | 15.09 |
| AT1G63295.2 | Thale cress | endoplasmic reticulum, nucleus, plastid | 16.26 | 10.47 |
Protein Annotations
| MapMan:35.2 | EntrezGene:828034 | UniProt:A0A178UTR4 | ProteinID:AEE81917.1 | ArrayExpress:AT4G00670 | EnsemblPlantsGene:AT4G00670 |
| RefSeq:AT4G00670 | TAIR:AT4G00670 | RefSeq:AT4G00670-TAIR-G | EnsemblPlants:AT4G00670.1 | TAIR:AT4G00670.1 | Unigene:At.48814 |
| EMBL:BT014759 | EMBL:BT015948 | RefSeq:NP_191976.2 | ProteinID:OAO97003.1 | PFAM:PF03763 | PO:PO:0000293 |
| PO:PO:0009015 | PANTHER:PTHR31775 | PANTHER:PTHR31775:SF2 | UniProt:Q6IDB4 | InterPro:Remorin_C | UniParc:UPI00003786EE |
| SEG:seg | : | : | : | : | : |
Description
At4g00670 [Source:UniProtKB/TrEMBL;Acc:Q6IDB4]
Coordinates
chr4:-:278316..279197
Molecular Weight (calculated)
14090.2 Da
IEP (calculated)
10.825
GRAVY (calculated)
-1.045
Length
123 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPNIPIQRG DEQSKVIKAW KELKITKVNN KTQKKLLDIS GWEKKKTTKI ESELARIQRK MDSKKMEKSE KLRNEKAAVH AKAQKKKADV QTRRAQEILD
101: AEEAAARFQA AGKIPKKSSL SCF
101: AEEAAARFQA AGKIPKKSSL SCF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.