Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05883 | Canola | mitochondrion | 53.71 | 78.33 |
| CDY71834 | Canola | cytosol, mitochondrion, nucleus | 78.29 | 77.84 |
| Bra018025.1-P | Field mustard | cytosol, mitochondrion, nucleus | 77.71 | 77.71 |
| Solyc06g035920.2.1 | Tomato | nucleus | 64.57 | 61.08 |
| Solyc03g025850.2.1 | Tomato | nucleus | 67.43 | 59.9 |
| PGSC0003DMT400037192 | Potato | cytosol | 67.43 | 59.6 |
| Solyc06g035910.1.1 | Tomato | cytosol, mitochondrion, nucleus | 24.0 | 58.33 |
| KRG91502 | Soybean | nucleus | 64.0 | 56.85 |
| KRH35326 | Soybean | nucleus | 62.29 | 56.19 |
| GSMUA_Achr7P04410_001 | Banana | plasma membrane | 54.86 | 56.14 |
| VIT_16s0050g00080.t01 | Wine grape | nucleus | 61.14 | 54.59 |
| KRH38487 | Soybean | nucleus | 62.86 | 53.4 |
| KRH09020 | Soybean | nucleus | 62.29 | 53.17 |
| AT2G45820.1 | Thale cress | cytosol | 57.71 | 53.16 |
| AT5G23750.3 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 68.0 | 51.97 |
| AT3G61260.1 | Thale cress | nucleus | 59.43 | 49.06 |
| Solyc06g035900.1.1 | Tomato | cytosol | 16.57 | 33.33 |
| AT4G00670.1 | Thale cress | nucleus | 20.0 | 28.46 |
| AT1G63295.2 | Thale cress | endoplasmic reticulum, nucleus, plastid | 28.0 | 25.65 |
Protein Annotations
| MapMan:35.1 | EntrezGene:824055 | EntrezGene:832440 | UniProt:A0A178VBV6 | ProteinID:AED93207.1 | ProteinID:AED93208.1 |
| ProteinID:AEE78475.1 | EMBL:AF387006 | ProteinID:ANM70284.1 | ArrayExpress:AT3G48940 | EnsemblPlantsGene:AT3G48940 | RefSeq:AT3G48940 |
| TAIR:AT3G48940 | RefSeq:AT3G48940-TAIR-G | EnsemblPlants:AT3G48940.1 | TAIR:AT3G48940.1 | ProteinID:BAB10048.1 | EMBL:BT000016 |
| ProteinID:CAB62016.1 | ncoils:Coil | GO:GO:0008150 | RefSeq:NP_001331907.1 | RefSeq:NP_190463.1 | RefSeq:NP_197764.1 |
| RefSeq:NP_974824.1 | ProteinID:OAO91079.1 | ProteinID:OAP03810.1 | PFAM:PF03763 | PFAM:PF03766 | PO:PO:0000037 |
| PO:PO:0001017 | PO:PO:0004507 | PO:PO:0007103 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31775 | PANTHER:PTHR31775:SF5 | UniProt:Q9SMT2 | InterPro:Remorin_C |
| InterPro:Remorin_N | UniParc:UPI00000A25C1 | SEG:seg | : | : | : |
Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q9SMT2]
Coordinates
chr3:-:18142618..18144311
Molecular Weight (calculated)
19678.6 Da
IEP (calculated)
9.748
GRAVY (calculated)
-0.850
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MTLEEQKKVI MPEAVASEPS PPSKEEKSDD SKAIVLVVAA KEPTEDKKVG SVHRDAVLVR LEQDKRISLI KAWEEAEKSK VENKAQKKIS SVGAWENSKK
101: ASVEAELKKI EEQLNKKKAH YTEQMKNKIA QIHKEAEEKR AMTEAKRGED VLKAEEMAAK YRATGTAPTK LFGFF
101: ASVEAELKKI EEQLNKKKAH YTEQMKNKIA QIHKEAEEKR AMTEAKRGED VLKAEEMAAK YRATGTAPTK LFGFF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.