Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018025.1-P | Field mustard | cytosol, mitochondrion, nucleus | 89.2 | 89.71 |
| CDY05883 | Canola | mitochondrion | 56.82 | 83.33 |
| CDY69344 | Canola | cytosol | 57.95 | 78.46 |
| AT3G48940.1 | Thale cress | nucleus | 77.84 | 78.29 |
| Solyc06g035920.2.1 | Tomato | nucleus | 63.64 | 60.54 |
| CDX87157 | Canola | cytosol | 66.48 | 60.31 |
| CDX88048 | Canola | nucleus | 68.75 | 59.02 |
| KRH35326 | Soybean | nucleus | 64.77 | 58.76 |
| GSMUA_Achr7P04410_001 | Banana | plasma membrane | 56.82 | 58.48 |
| Solyc06g035910.1.1 | Tomato | cytosol, mitochondrion, nucleus | 23.86 | 58.33 |
| KRG91502 | Soybean | nucleus | 64.77 | 57.87 |
| PGSC0003DMT400037192 | Potato | cytosol | 64.77 | 57.58 |
| Solyc03g025850.2.1 | Tomato | nucleus | 64.2 | 57.36 |
| VIT_16s0050g00080.t01 | Wine grape | nucleus | 61.36 | 55.1 |
| KRH38487 | Soybean | nucleus | 62.5 | 53.4 |
| CDX71754 | Canola | cytosol, mitochondrion, nucleus | 54.55 | 53.33 |
| KRH09020 | Soybean | nucleus | 61.93 | 53.17 |
| CDY37068 | Canola | nucleus | 58.52 | 52.82 |
| CDY06318 | Canola | cytosol, nucleus, plastid | 58.52 | 52.82 |
| CDY27356 | Canola | nucleus | 57.39 | 51.79 |
| CDY18898 | Canola | cytosol | 55.11 | 50.52 |
| CDX74768 | Canola | nucleus | 55.11 | 50.52 |
| CDY48933 | Canola | cytosol | 55.68 | 50.52 |
| CDY66598 | Canola | cytosol, nucleus, plastid | 22.16 | 37.5 |
| Solyc06g035900.1.1 | Tomato | cytosol | 15.91 | 32.18 |
| CDX91900 | Canola | cytosol, mitochondrion, nucleus | 18.18 | 24.24 |
| CDX74343 | Canola | nucleus | 18.18 | 24.24 |
Protein Annotations
| EnsemblPlants:CDY71834 | EnsemblPlantsGene:GSBRNA2T00020664001 | InterPro:Remorin_C | InterPro:Remorin_N | ncoils:Coil | PANTHER:PTHR31775 |
| PANTHER:PTHR31775:SF5 | PFAM:PF03763 | PFAM:PF03766 | ProteinID:CDY71834 | ProteinID:CDY71834.1 | SEG:seg |
| UniParc:UPI0004EDB0C3 | UniProt:A0A078JYT2 | MapMan:35.1 | : | : | : |
Description
BnaAnng38930DBnaAnng38930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JYT2]
Coordinates
chrLK047731:+:129..1432
Molecular Weight (calculated)
19839.7 Da
IEP (calculated)
7.366
GRAVY (calculated)
-0.982
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MTQEEQKKNV TEPKIAMSNP SPPSSEEKTD DSKALVLIVA KEPVEEKKEG SVNREDDVLA KLETEKRMSL IKAWEEAEKS KVENKAQKKL SSVGAWENSK
101: KASAEAELKK IEEQLIKKKA EYAEQMKNKI VQIHKEAEEK RAMTEANRGE EILKAEEMAA KYRATGTAPT KLFGCF
101: KASAEAELKK IEEQLIKKKA EYAEQMKNKI VQIHKEAEEK RAMTEANRGE EILKAEEMAA KYRATGTAPT KLFGCF
001: MTLEEQKKVI MPEAVASEPS PPSKEEKSDD SKAIVLVVAA KEPTEDKKVG SVHRDAVLVR LEQDKRISLI KAWEEAEKSK VENKAQKKIS SVGAWENSKK
101: ASVEAELKKI EEQLNKKKAH YTEQMKNKIA QIHKEAEEKR AMTEAKRGED VLKAEEMAAK YRATGTAPTK LFGFF
101: ASVEAELKKI EEQLNKKKAH YTEQMKNKIA QIHKEAEEKR AMTEAKRGED VLKAEEMAAK YRATGTAPTK LFGFF
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q9SMT2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.