Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74768 | Canola | nucleus | 97.4 | 97.4 |
| CDY37068 | Canola | nucleus | 85.94 | 84.62 |
| CDY06318 | Canola | cytosol, nucleus, plastid | 85.42 | 84.1 |
| CDY27356 | Canola | nucleus | 82.81 | 81.54 |
| AT2G45820.1 | Thale cress | cytosol | 78.65 | 79.47 |
| CDY69344 | Canola | cytosol | 43.23 | 63.85 |
| CDX71754 | Canola | cytosol, mitochondrion, nucleus | 58.33 | 62.22 |
| PGSC0003DMT400055730 | Potato | cytosol | 16.67 | 61.54 |
| CDY05883 | Canola | mitochondrion | 38.02 | 60.83 |
| KRH48177 | Soybean | plasma membrane | 62.5 | 60.61 |
| CDY48933 | Canola | cytosol | 59.38 | 58.76 |
| VIT_15s0046g03180.t01 | Wine grape | nucleus | 59.38 | 58.16 |
| KRH65100 | Soybean | cytosol | 59.38 | 57.0 |
| PGSC0003DMT400000462 | Potato | cytosol, mitochondrion, nucleus, plastid | 51.56 | 56.9 |
| KRH00705 | Soybean | cytosol, nucleus, plastid | 53.65 | 56.28 |
| GSMUA_Achr1P03030_001 | Banana | nucleus | 55.21 | 55.79 |
| Solyc01g094370.2.1 | Tomato | plastid | 50.52 | 55.75 |
| GSMUA_Achr1P00240_001 | Banana | nucleus | 55.73 | 55.73 |
| Solyc05g048820.2.1 | Tomato | nucleus, plastid | 44.27 | 55.56 |
| Zm00001d002842_P001 | Maize | extracellular, mitochondrion, plasma membrane | 57.29 | 55.28 |
| CDY71834 | Canola | cytosol, mitochondrion, nucleus | 50.52 | 55.11 |
| GSMUA_Achr11P... | Banana | nucleus | 56.25 | 55.1 |
| TraesCS2A01G369800.1 | Wheat | nucleus | 59.38 | 54.29 |
| KRH40491 | Soybean | cytosol | 50.52 | 53.01 |
| GSMUA_Achr4P25330_001 | Banana | nucleus | 48.96 | 52.81 |
| TraesCS2B01G386900.1 | Wheat | nucleus | 58.85 | 52.8 |
| CDX87157 | Canola | cytosol | 53.12 | 52.58 |
| TraesCS2D01G366300.2 | Wheat | nucleus | 58.33 | 52.34 |
| EES12557 | Sorghum | cytosol | 57.29 | 51.89 |
| TraesCS6D01G219800.1 | Wheat | cytosol | 51.04 | 51.31 |
| Os03t0111200-01 | Rice | nucleus | 46.35 | 50.86 |
| KXG31130 | Sorghum | cytosol | 51.56 | 50.51 |
| CDX88048 | Canola | nucleus | 53.65 | 50.24 |
| TraesCS6A01G237200.2 | Wheat | cytosol | 50.0 | 49.74 |
| TraesCS6B01G265700.2 | Wheat | cytosol | 49.48 | 49.74 |
| EER92997 | Sorghum | nucleus | 46.88 | 49.72 |
| TraesCS5A01G554600.1 | Wheat | cytosol | 45.31 | 49.15 |
| TraesCS1A01G174700.1 | Wheat | nucleus | 45.31 | 49.15 |
| Zm00001d017386_P001 | Maize | cytosol | 47.4 | 48.92 |
| TraesCS1D01G164300.1 | Wheat | nucleus | 44.79 | 48.59 |
| TraesCSU01G033600.1 | Wheat | cytosol | 44.27 | 48.57 |
| TraesCS4B01G393000.1 | Wheat | cytosol | 44.27 | 48.57 |
| HORVU4Hr1G089540.2 | Barley | cytosol | 44.27 | 48.57 |
| EER93970 | Sorghum | nucleus | 39.06 | 48.39 |
| GSMUA_Achr5P12250_001 | Banana | cytosol | 46.88 | 48.39 |
| Zm00001d025932_P003 | Maize | mitochondrion | 50.0 | 48.0 |
| Os04t0533300-02 | Rice | extracellular, plasma membrane | 49.48 | 45.45 |
| Zm00001d027330_P001 | Maize | extracellular, mitochondrion, plasma membrane | 43.23 | 45.36 |
| HORVU6Hr1G060700.5 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 43.23 | 43.46 |
| Os02t0642200-01 | Rice | plasma membrane | 45.83 | 43.35 |
| PGSC0003DMT400026584 | Potato | nucleus | 42.71 | 42.93 |
| Solyc10g017540.2.1 | Tomato | nucleus | 42.19 | 42.86 |
| HORVU1Hr1G045920.1 | Barley | nucleus | 22.4 | 40.57 |
| GSMUA_Achr5P10760_001 | Banana | cytosol | 50.52 | 36.19 |
| Os10t0503800-01 | Rice | nucleus | 25.0 | 36.09 |
| HORVU2Hr1G091680.3 | Barley | cytosol, plasma membrane | 51.56 | 33.0 |
| CDY66598 | Canola | cytosol, nucleus, plastid | 16.67 | 30.77 |
| CDX74343 | Canola | nucleus | 17.19 | 25.0 |
| CDX91900 | Canola | cytosol, mitochondrion, nucleus | 17.19 | 25.0 |
Protein Annotations
| EnsemblPlants:CDY18898 | EnsemblPlantsGene:GSBRNA2T00006088001 | InterPro:Remorin_C | InterPro:Remorin_N | ncoils:Coil | PANTHER:PTHR31775 |
| PANTHER:PTHR31775:SF2 | PFAM:PF03763 | PFAM:PF03766 | ProteinID:CDY18898 | ProteinID:CDY18898.1 | SEG:seg |
| UniParc:UPI0004EDBFA0 | UniProt:A0A078G2K1 | MapMan:35.1 | : | : | : |
Description
BnaC04g04520DBnaC04g04520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G2K1]
Coordinates
chrLK032090:+:184813..186879
Molecular Weight (calculated)
21068.2 Da
IEP (calculated)
8.205
GRAVY (calculated)
-0.784
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEQKTTKV DVESPAVVAP VKEPTPVPVE ASKDVAEEKI HTPPPPDESK ALAVVEKPIE EATPKKGSVD RDVILADLEK EKKSSFIKAW EESEKSKAEN
101: KAQKKISDVL AWENSKKAAT EAQLSKIEEK LEKKKAVYGE KMKNKVAAIH KQAEEKRAMV EAKKGEELLK AEETAAKHRA TGVVPKATCG CF
101: KAQKKISDVL AWENSKKAAT EAQLSKIEEK LEKKKAVYGE KMKNKVAAIH KQAEEKRAMV EAKKGEELLK AEETAAKHRA TGVVPKATCG CF
001: MAEEQKTSKV DVESPAVLAP AKEPTPAPVE VADEKIHNPP PVESKALAVV EKPIEEHTPK KASSGSADRD VILADLEKEK KTSFIKAWEE SEKSKAENRA
101: QKKISDVHAW ENSKKAAVEA QLRKIEEKLE KKKAQYGEKM KNKVAAIHKL AEEKRAMVEA KKGEELLKAE EMGAKYRATG VVPKATCGCF
101: QKKISDVHAW ENSKKAAVEA QLRKIEEKLE KKKAQYGEKM KNKVAAIHKL AEEKRAMVEA KKGEELLKAE EMGAKYRATG VVPKATCGCF
Arabidopsis Description
DBPRemorin [Source:UniProtKB/Swiss-Prot;Acc:O80837]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.