Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05883 | Canola | mitochondrion | 63.08 | 68.33 |
| CDX87157 | Canola | cytosol | 97.69 | 65.46 |
| Bra026483.1-P | Field mustard | nucleus | 97.69 | 64.47 |
| CDX88048 | Canola | nucleus | 93.85 | 59.51 |
| CDY71834 | Canola | cytosol, mitochondrion, nucleus | 78.46 | 57.95 |
| Solyc06g035910.1.1 | Tomato | cytosol, mitochondrion, nucleus | 30.0 | 54.17 |
| GSMUA_Achr7P04410_001 | Banana | plasma membrane | 68.46 | 52.05 |
| AT5G23750.3 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 90.77 | 51.53 |
| VIT_16s0050g00080.t01 | Wine grape | nucleus | 76.15 | 50.51 |
| PGSC0003DMT400037192 | Potato | cytosol | 76.15 | 50.0 |
| KRH35326 | Soybean | nucleus | 73.85 | 49.48 |
| Solyc03g025850.2.1 | Tomato | nucleus | 74.62 | 49.24 |
| KRG91502 | Soybean | nucleus | 73.08 | 48.22 |
| KRH38487 | Soybean | nucleus | 74.62 | 47.09 |
| KRH09020 | Soybean | nucleus | 73.85 | 46.83 |
| Solyc06g035920.2.1 | Tomato | nucleus | 66.15 | 46.49 |
| CDX71754 | Canola | cytosol, mitochondrion, nucleus | 63.85 | 46.11 |
| CDY37068 | Canola | nucleus | 66.15 | 44.1 |
| CDX74768 | Canola | nucleus | 64.62 | 43.75 |
| CDY27356 | Canola | nucleus | 65.38 | 43.59 |
| CDY06318 | Canola | cytosol, nucleus, plastid | 65.38 | 43.59 |
| CDY48933 | Canola | cytosol | 64.62 | 43.3 |
| CDY18898 | Canola | cytosol | 63.85 | 43.23 |
| CDY66598 | Canola | cytosol, nucleus, plastid | 26.15 | 32.69 |
| Solyc06g035900.1.1 | Tomato | cytosol | 20.0 | 29.89 |
| CDX91900 | Canola | cytosol, mitochondrion, nucleus | 24.62 | 24.24 |
| CDX74343 | Canola | nucleus | 24.62 | 24.24 |
Protein Annotations
| EnsemblPlants:CDY69344 | EnsemblPlantsGene:GSBRNA2T00087006001 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31775 | PANTHER:PTHR31775:SF5 |
| PFAM:PF03763 | ProteinID:CDY69344 | ProteinID:CDY69344.1 | SEG:seg | UniParc:UPI0004EE407B | UniProt:A0A078JRC5 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaAnng30100DBnaAnng30100D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JRC5]
Coordinates
chrLK039203:-:3022..4221
Molecular Weight (calculated)
14980.1 Da
IEP (calculated)
9.410
GRAVY (calculated)
-0.936
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: EEKEGSINRD AVLARVETEK RMSLIKAWEE AEKCKVENKA EKKLSSIESW ENNKKAAVEA ELKKIEEQLE KKKAEYVELM KNKIAQIHKQ AEEKRAMIEA
101: RRGEEVLKAE ELAAKYRASG TAPKKLFGFM
101: RRGEEVLKAE ELAAKYRASG TAPKKLFGFM
001: MAEEEPKKVT ETVSEPTPTP EVPVEKPAAA ADVAPQEKPV APPPVLPSPA PAEEKQEDSK AIVPVVPKVE EEKKEGSVNR DAVLARVETE KRMSLIKAWE
101: EAEKCKVENK AEKKLSSIGS WENNKKAAVE AELKKMEEQL EKKKAEYVEQ MKNKIAQIHK EAEEKRAMIE AKRGEEILKA EELAAKYRAT GTAPKKLFGC
201: M
101: EAEKCKVENK AEKKLSSIGS WENNKKAAVE AELKKMEEQL EKKKAEYVEQ MKNKIAQIHK EAEEKRAMIE AKRGEEILKA EELAAKYRAT GTAPKKLFGC
201: M
Arabidopsis Description
Remorin family protein [Source:TAIR;Acc:AT5G23750]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.