Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69344 | Canola | cytosol | 68.33 | 63.08 |
| Solyc06g035910.1.1 | Tomato | cytosol, mitochondrion, nucleus | 35.83 | 59.72 |
| CDY71834 | Canola | cytosol, mitochondrion, nucleus | 83.33 | 56.82 |
| AT3G48940.1 | Thale cress | nucleus | 78.33 | 53.71 |
| GSMUA_Achr7P04410_001 | Banana | plasma membrane | 62.5 | 43.86 |
| CDX87157 | Canola | cytosol | 69.17 | 42.78 |
| CDX88048 | Canola | nucleus | 70.83 | 41.46 |
| PGSC0003DMT400037192 | Potato | cytosol | 68.33 | 41.41 |
| KRH35326 | Soybean | nucleus | 66.67 | 41.24 |
| CDX71754 | Canola | cytosol, mitochondrion, nucleus | 61.67 | 41.11 |
| VIT_16s0050g00080.t01 | Wine grape | nucleus | 66.67 | 40.82 |
| Solyc03g025850.2.1 | Tomato | nucleus | 66.67 | 40.61 |
| Solyc06g035920.2.1 | Tomato | nucleus | 62.5 | 40.54 |
| KRG91502 | Soybean | nucleus | 65.83 | 40.1 |
| CDY37068 | Canola | nucleus | 64.17 | 39.49 |
| CDY06318 | Canola | cytosol, nucleus, plastid | 64.17 | 39.49 |
| KRH09020 | Soybean | nucleus | 66.67 | 39.02 |
| KRH38487 | Soybean | nucleus | 66.67 | 38.84 |
| CDY48933 | Canola | cytosol | 62.5 | 38.66 |
| CDX74768 | Canola | nucleus | 61.67 | 38.54 |
| CDY27356 | Canola | nucleus | 62.5 | 38.46 |
| CDY18898 | Canola | cytosol | 60.83 | 38.02 |
| Solyc06g035900.1.1 | Tomato | cytosol | 24.17 | 33.33 |
| CDX91900 | Canola | cytosol, mitochondrion, nucleus | 29.17 | 26.52 |
| CDX74343 | Canola | nucleus | 27.5 | 25.0 |
| CDY66598 | Canola | cytosol, nucleus, plastid | 20.83 | 24.04 |
Protein Annotations
| EnsemblPlants:CDY05883 | EnsemblPlantsGene:GSBRNA2T00121683001 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31775 | PANTHER:PTHR31775:SF5 |
| PFAM:PF03763 | ProteinID:CDY05883 | ProteinID:CDY05883.1 | SEG:seg | UniParc:UPI0004EED321 | MapMan:35.1 |
Description
BnaC08g20600D
Coordinates
chrLK031966:-:299840..300485
Molecular Weight (calculated)
13672.7 Da
IEP (calculated)
10.436
GRAVY (calculated)
-0.914
Length
120 amino acids
Sequence
(BLAST)
(BLAST)
001: MMFWLNSRQK RGCLSSKLGK AEKSKVENKA QKKLSSVGAW ENSKKAYAEA ELKKIEQQLI KKKAEYAEQM KNKIAQIHKE AEEKRAMTEA KRGEEILKAE
101: EMAAKYRATG TAPTKLFGCF
101: EMAAKYRATG TAPTKLFGCF
001: MTLEEQKKVI MPEAVASEPS PPSKEEKSDD SKAIVLVVAA KEPTEDKKVG SVHRDAVLVR LEQDKRISLI KAWEEAEKSK VENKAQKKIS SVGAWENSKK
101: ASVEAELKKI EEQLNKKKAH YTEQMKNKIA QIHKEAEEKR AMTEAKRGED VLKAEEMAAK YRATGTAPTK LFGFF
101: ASVEAELKKI EEQLNKKKAH YTEQMKNKIA QIHKEAEEKR AMTEAKRGED VLKAEEMAAK YRATGTAPTK LFGFF
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q9SMT2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.