Factsheet for Solyc06g035920.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
extracellular 1
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g035910.1.1	Tomato	cytosol, mitochondrion, nucleus	32.43	83.33
CDY69344	Canola	cytosol	46.49	66.15
Solyc03g025850.2.1	Tomato	nucleus	69.19	64.97
AT3G48940.1	Thale cress	nucleus	61.08	64.57
CDY71834	Canola	cytosol, mitochondrion, nucleus	60.54	63.64
Bra018025.1-P	Field mustard	cytosol, mitochondrion, nucleus	59.46	62.86
CDY05883	Canola	mitochondrion	40.54	62.5
GSMUA_Achr7P04410_001	Banana	plasma membrane	56.76	61.4
VIT_16s0050g00080.t01	Wine grape	nucleus	60.54	57.14
KRH38487	Soybean	nucleus	61.62	55.34
KRG91502	Soybean	nucleus	58.92	55.33
KRH35326	Soybean	nucleus	57.3	54.64
KRH09020	Soybean	nucleus	60.0	54.15
Bra026483.1-P	Field mustard	nucleus	57.3	53.81
CDX87157	Canola	cytosol	56.22	53.61
Solyc05g048820.2.1	Tomato	nucleus, plastid	43.78	52.94
Solyc01g094370.2.1	Tomato	plastid	49.19	52.3
CDX88048	Canola	nucleus	56.76	51.22
Bra009707.1-P	Field mustard	nucleus	56.76	51.22
Solyc06g035900.1.1	Tomato	cytosol	21.62	45.98
AT5G23750.3	Thale cress	cytosol, mitochondrion, nucleus, plastid	56.76	45.85
Solyc10g017540.2.1	Tomato	nucleus	43.24	42.33

Protein Annotations

EnsemblPlants:Solyc06g035920.2.1	EnsemblPlantsGene:Solyc06g035920.2	InterPro:Remorin_C	InterPro:Remorin_N	ncoils:Coil	PANTHER:PTHR31775
PANTHER:PTHR31775:SF5	PFAM:PF03763	PFAM:PF03766	SEG:seg	UniParc:UPI0002765D69	UniProt:K4C4W2
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:25270356..25277247

Molecular Weight (calculated)

20520.6 Da

IEP (calculated)

8.199

GRAVY (calculated)

-0.745

Length

185 amino acids

Sequence
(BLAST)

001: MGEEEAKKVE TAEHAAEEKA IVLSTVPPSE ESKDKPDDSK ALVIVEPETK ALVPVEKKGS IDRDATLARL TTEKRLSLIK AWEESEKAKA ENKAQKKIAE
101: ILAWENSKKA SLEAELKRTE EQLLKKKAEY IEKLKNKIAL VHKSAEEKRA ITEAKRGEDL LTAEEMAAKC RATGSSPKKP LLGCF

Best Arabidopsis Sequence Match ( AT3G48940.1 )
(BLAST)

001: MTLEEQKKVI MPEAVASEPS PPSKEEKSDD SKAIVLVVAA KEPTEDKKVG SVHRDAVLVR LEQDKRISLI KAWEEAEKSK VENKAQKKIS SVGAWENSKK
101: ASVEAELKKI EEQLNKKKAH YTEQMKNKIA QIHKEAEEKR AMTEAKRGED VLKAEEMAAK YRATGTAPTK LFGFF

Arabidopsis Description

Remorin family protein [Source:UniProtKB/TrEMBL;Acc:Q9SMT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.