Factsheet for Solyc05g048820.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
extracellular 1
mitochondrion 1
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g094370.2.1
Solyc05g006420.2.1
Solyc05g048820.2.1
Solyc10g017540.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45820.1	Solyc05g006420.2.1	AT1G10470.1	9771897
AT2G45820.1	Solyc01g094370.2.1	AT2G45820.1	21798944
AT2G45820.1	Solyc05g048820.2.1	AT2G45820.1	21798944
AT2G45820.1	Solyc10g017540.2.1	AT2G45820.1	21798944
AT3G61260.1	Solyc05g006420.2.1	AT1G10470.1	9771897

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055730	Potato	cytosol	30.72	90.38
Solyc06g035910.1.1	Tomato	cytosol, mitochondrion, nucleus	27.45	58.33
Solyc01g094370.2.1	Tomato	plastid	60.78	53.45
VIT_15s0046g03180.t01	Wine grape	nucleus	64.05	50.0
KRH00705	Soybean	cytosol, nucleus, plastid	59.48	49.73
CDX71754	Canola	cytosol, mitochondrion, nucleus	54.9	46.67
Solyc10g017540.2.1	Tomato	nucleus	57.52	46.56
KRH48177	Soybean	plasma membrane	60.13	46.46
KRH40491	Soybean	cytosol	54.25	45.36
CDX74768	Canola	nucleus	56.86	45.31
Bra004940.1-P	Field mustard	nucleus	56.86	45.31
Bra039311.1-P	Field mustard	cytosol, nucleus, plastid	56.86	44.62
CDY37068	Canola	nucleus	56.86	44.62
CDY06318	Canola	cytosol, nucleus, plastid	56.86	44.62
CDY48933	Canola	cytosol	56.21	44.33
Bra007589.1-P	Field mustard	nucleus	56.21	44.33
CDY18898	Canola	cytosol	55.56	44.27
AT2G45820.1	Thale cress	cytosol	54.9	44.21
Solyc06g035920.2.1	Tomato	nucleus	52.94	43.78
CDY27356	Canola	nucleus	55.56	43.59
KRH65100	Soybean	cytosol	56.86	43.5
Os03t0111200-01	Rice	nucleus	49.02	42.86
TraesCSU01G033600.1	Wheat	cytosol	48.37	42.29
Solyc03g025850.2.1	Tomato	nucleus	54.25	42.13
EER93970	Sorghum	nucleus	42.48	41.94
HORVU4Hr1G089540.2	Barley	cytosol	47.71	41.71
TraesCS4B01G393000.1	Wheat	cytosol	47.71	41.71
HORVU6Hr1G060700.5	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	51.63	41.36
GSMUA_Achr11P...	Banana	nucleus	52.94	41.33
Zm00001d002842_P001	Maize	extracellular, mitochondrion, plasma membrane	53.59	41.21
TraesCS6D01G219800.1	Wheat	cytosol	50.98	40.84
TraesCS5A01G554600.1	Wheat	cytosol	47.06	40.68
GSMUA_Achr1P03030_001	Banana	nucleus	50.33	40.53
GSMUA_Achr4P25330_001	Banana	nucleus	47.06	40.45
TraesCS6B01G265700.2	Wheat	cytosol	50.33	40.31
TraesCS1A01G174700.1	Wheat	nucleus	46.41	40.11
AT3G61260.1	Thale cress	nucleus	55.56	40.09
TraesCS1D01G164300.1	Wheat	nucleus	45.75	39.55
TraesCS6A01G237200.2	Wheat	cytosol	49.67	39.38
Zm00001d017386_P001	Maize	cytosol	47.71	39.25
EER92997	Sorghum	nucleus	46.41	39.23
GSMUA_Achr1P00240_001	Banana	nucleus	49.02	39.06
TraesCS2A01G369800.1	Wheat	nucleus	53.59	39.05
GSMUA_Achr5P12250_001	Banana	cytosol	47.06	38.71
EES12557	Sorghum	cytosol	53.59	38.68
Zm00001d025932_P003	Maize	mitochondrion	50.33	38.5
TraesCS2B01G386900.1	Wheat	nucleus	53.59	38.32
TraesCS2D01G366300.2	Wheat	nucleus	53.59	38.32
Os04t0533300-02	Rice	extracellular, plasma membrane	52.29	38.28
KXG31130	Sorghum	cytosol	47.06	36.73
Os02t0642200-01	Rice	plasma membrane	48.37	36.45
Zm00001d027330_P001	Maize	extracellular, mitochondrion, plasma membrane	43.14	36.07
HORVU1Hr1G045920.1	Barley	nucleus	24.84	35.85
Solyc06g035900.1.1	Tomato	cytosol	17.65	31.03
GSMUA_Achr5P10760_001	Banana	cytosol	49.02	27.99
Os10t0503800-01	Rice	nucleus	24.18	27.82
HORVU2Hr1G091680.3	Barley	cytosol, plasma membrane	50.33	25.67

Protein Annotations

EnsemblPlants:Solyc05g048820.2.1	EnsemblPlantsGene:Solyc05g048820.2	InterPro:Remorin_C	InterPro:Remorin_N	ncoils:Coil	PANTHER:PTHR31775
PANTHER:PTHR31775:SF2	PFAM:PF03763	PFAM:PF03766	SEG:seg	UniParc:UPI0002766E72	UniProt:K4C114
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr5:+:59517528..59520134

Molecular Weight (calculated)

17098.5 Da

IEP (calculated)

10.470

GRAVY (calculated)

-1.079

Length

153 amino acids

Sequence
(BLAST)

001: MATNNYKAVT TLPPQNTNPS TNKSSKGSAE RDTALAQLSN DKKSAFVKAW EESEKSKVDN KAQKKLSKVA AWENKKKAHL DAKLKKLEVR LEQKKAEYAE
101: KLKNKEALIH KEAEEKKAMV EAKRGEQILK TEDMAAKYRA TGQNPKKLLG CVG

Best Arabidopsis Sequence Match ( AT5G23750.3 )
(BLAST)

001: MTTRNRTSLP NISSSVSSNK NIVVPNIMAE EEPKKVTETV SEPTPTPEVP VEKPAAAADV APQEKPVAPP PVLPSPAPAE EKQEDSKAIV PVVPKEVEEE
101: KKEGSVNRDA VLARVETEKR MSLIKAWEEA EKCKVENKAE KKLSSIGSWE NNKKAAVEAE LKKMEEQLEK KKAEYVEQMK NKIAQIHKEA EEKRAMIEAK
201: RGEEILKAEE LAAKYRATGT APKKLFGCM

Arabidopsis Description

Remorin family protein [Source:TAIR;Acc:AT5G23750]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.