Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
19621931
plasma membrane: 27800704 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0642200-01 | |
| Os03t0111200-01 | |
| Os04t0533300-02 | |
| Os10t0503800-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G45820.1 | Os02t0642200-01 | AT2G45820.1 | 21798944 |
| AT2G45820.1 | Os03t0111200-01 | AT2G45820.1 | 21798944 |
| AT2G45820.1 | Os04t0533300-02 | AT2G45820.1 | 21798944 |
| AT2G45820.1 | Os10t0503800-01 | AT2G45820.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G164300.1 | Wheat | nucleus | 61.65 | 46.33 |
| TraesCS1A01G174700.1 | Wheat | nucleus | 61.65 | 46.33 |
| EER93970 | Sorghum | nucleus | 42.86 | 36.77 |
| HORVU1Hr1G045920.1 | Barley | nucleus | 28.57 | 35.85 |
| Os03t0111200-01 | Rice | nucleus | 45.11 | 34.29 |
| GSMUA_Achr1P03030_001 | Banana | nucleus | 45.86 | 32.11 |
| GSMUA_Achr4P25330_001 | Banana | nucleus | 39.85 | 29.78 |
| GSMUA_Achr11P... | Banana | nucleus | 42.86 | 29.08 |
| GSMUA_Achr1P00240_001 | Banana | nucleus | 40.6 | 28.12 |
| CDY48933 | Canola | cytosol | 39.85 | 27.32 |
| Bra007589.1-P | Field mustard | nucleus | 39.85 | 27.32 |
| Solyc01g094370.2.1 | Tomato | plastid | 35.34 | 27.01 |
| PGSC0003DMT400000462 | Potato | cytosol, mitochondrion, nucleus, plastid | 35.34 | 27.01 |
| CDX71754 | Canola | cytosol, mitochondrion, nucleus | 35.34 | 26.11 |
| CDY27356 | Canola | nucleus | 37.59 | 25.64 |
| CDY18898 | Canola | cytosol | 36.09 | 25.0 |
| CDY06318 | Canola | cytosol, nucleus, plastid | 36.09 | 24.62 |
| KRH00705 | Soybean | cytosol, nucleus, plastid | 33.83 | 24.59 |
| KRH40491 | Soybean | cytosol | 33.83 | 24.59 |
| VIT_15s0046g03180.t01 | Wine grape | nucleus | 36.09 | 24.49 |
| CDX74768 | Canola | nucleus | 35.34 | 24.48 |
| Bra004940.1-P | Field mustard | nucleus | 35.34 | 24.48 |
| GSMUA_Achr5P12250_001 | Banana | cytosol | 33.83 | 24.19 |
| Solyc05g048820.2.1 | Tomato | nucleus, plastid | 27.82 | 24.18 |
| CDY37068 | Canola | nucleus | 35.34 | 24.1 |
| Bra039311.1-P | Field mustard | cytosol, nucleus, plastid | 35.34 | 24.1 |
| Os02t0824500-01 | Rice | cytosol | 32.33 | 24.02 |
| AT3G61260.1 | Thale cress | nucleus | 37.59 | 23.58 |
| AT2G45820.1 | Thale cress | cytosol | 33.08 | 23.16 |
| Os02t0642200-01 | Rice | plasma membrane | 35.34 | 23.15 |
| KRH48177 | Soybean | plasma membrane | 33.83 | 22.73 |
| KRH65100 | Soybean | cytosol | 33.08 | 22.0 |
| PGSC0003DMT400026584 | Potato | nucleus | 31.58 | 21.99 |
| Solyc10g017540.2.1 | Tomato | nucleus | 30.08 | 21.16 |
| Os04t0533300-02 | Rice | extracellular, plasma membrane | 33.08 | 21.05 |
| GSMUA_Achr5P10760_001 | Banana | cytosol | 38.35 | 19.03 |
| PGSC0003DMT400055730 | Potato | cytosol | 0.75 | 1.92 |
Protein Annotations
| EMBL:AK073955 | EnsemblPlants:Os10t0503800-01 | EnsemblPlantsGene:Os10g0503800 | InterPro:Remorin_C | InterPro:Remorin_N | PANTHER:PTHR31775 |
| PANTHER:PTHR31775:SF4 | PFAM:PF03763 | PFAM:PF03766 | ProteinID:ABB47853.2 | ProteinID:BAT11556.1 | SEG:seg |
| UniParc:UPI0000DB3FA6 | UniProt:Q337E7 | MapMan:35.2 | : | : | : |
Description
REMORIN 1.2Similar to Remorin. (Os10t0503800-01);Non-protein coding transcript. (Os10t0503800-02)
Coordinates
chr10:-:19244954..19246731
Molecular Weight (calculated)
14266.6 Da
IEP (calculated)
4.753
GRAVY (calculated)
-0.571
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEVAPPAPA PEPTKDIAEE RAAVPAPEES KAMTVVDDAE KAAATGGSHE RDALLTTVAT EKRISLIKAW EENEKAKADN KAAKKLADIA SWENSKVAEI
101: EAEIKKYQVS SAQLSSSTSR TRRDQLCVCE SLS
101: EAEIKKYQVS SAQLSSSTSR TRRDQLCVCE SLS
001: MAEEQKIALE SESPAKVTTP APADTPAPAP AEIPAPAPAP TPADVTKDVA EEKIQNPPPE QIFDDSKALT VVEKPVEEPA PAKPASASLD RDVKLADLSK
101: EKRLSFVRAW EESEKSKAEN KAEKKIADVH AWENSKKAAV EAQLKKIEEQ LEKKKAEYAE RMKNKVAAIH KEAEERRAMI EAKRGEDVLK AEETAAKYRA
201: TGIVPKATCG CF
101: EKRLSFVRAW EESEKSKAEN KAEKKIADVH AWENSKKAAV EAQLKKIEEQ LEKKKAEYAE RMKNKVAAIH KEAEERRAMI EAKRGEDVLK AEETAAKYRA
201: TGIVPKATCG CF
Arabidopsis Description
Uncharacterized protein At3g61260 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2D8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.