Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06318 | Canola | cytosol, nucleus, plastid | 93.33 | 93.33 |
| CDY37068 | Canola | nucleus | 92.31 | 92.31 |
| Bra039311.1-P | Field mustard | cytosol, nucleus, plastid | 91.79 | 91.79 |
| CDX74768 | Canola | nucleus | 82.56 | 83.85 |
| CDY18898 | Canola | cytosol | 81.54 | 82.81 |
| AT2G45820.1 | Thale cress | cytosol | 74.87 | 76.84 |
| PGSC0003DMT400055730 | Potato | cytosol | 17.95 | 67.31 |
| CDY69344 | Canola | cytosol | 43.59 | 65.38 |
| CDX71754 | Canola | cytosol, mitochondrion, nucleus | 58.97 | 63.89 |
| CDY05883 | Canola | mitochondrion | 38.46 | 62.5 |
| KRH48177 | Soybean | plasma membrane | 62.56 | 61.62 |
| CDY48933 | Canola | cytosol | 60.0 | 60.31 |
| KRH00705 | Soybean | cytosol, nucleus, plastid | 56.41 | 60.11 |
| PGSC0003DMT400000462 | Potato | cytosol, mitochondrion, nucleus, plastid | 52.82 | 59.2 |
| VIT_15s0046g03180.t01 | Wine grape | nucleus | 58.97 | 58.67 |
| GSMUA_Achr1P00240_001 | Banana | nucleus | 57.44 | 58.33 |
| Zm00001d002842_P001 | Maize | extracellular, mitochondrion, plasma membrane | 58.97 | 57.79 |
| CDY71834 | Canola | cytosol, mitochondrion, nucleus | 51.79 | 57.39 |
| KRH65100 | Soybean | cytosol | 58.46 | 57.0 |
| Solyc01g094370.2.1 | Tomato | plastid | 50.77 | 56.9 |
| GSMUA_Achr1P03030_001 | Banana | nucleus | 55.38 | 56.84 |
| KRH40491 | Soybean | cytosol | 53.33 | 56.83 |
| TraesCS2A01G369800.1 | Wheat | nucleus | 60.51 | 56.19 |
| GSMUA_Achr11P... | Banana | nucleus | 55.9 | 55.61 |
| Solyc05g048820.2.1 | Tomato | nucleus, plastid | 43.59 | 55.56 |
| EES12557 | Sorghum | cytosol | 59.49 | 54.72 |
| GSMUA_Achr4P25330_001 | Banana | nucleus | 49.74 | 54.49 |
| TraesCS2B01G386900.1 | Wheat | nucleus | 59.49 | 54.21 |
| TraesCS2D01G366300.2 | Wheat | nucleus | 58.97 | 53.74 |
| Os03t0111200-01 | Rice | nucleus | 47.69 | 53.14 |
| TraesCS6B01G265700.2 | Wheat | cytosol | 51.79 | 52.88 |
| CDX87157 | Canola | cytosol | 52.31 | 52.58 |
| TraesCS1D01G164300.1 | Wheat | nucleus | 47.69 | 52.54 |
| TraesCS1A01G174700.1 | Wheat | nucleus | 47.69 | 52.54 |
| EER93970 | Sorghum | nucleus | 41.54 | 52.26 |
| TraesCS6D01G219800.1 | Wheat | cytosol | 50.77 | 51.83 |
| TraesCS6A01G237200.2 | Wheat | cytosol | 51.28 | 51.81 |
| EER92997 | Sorghum | nucleus | 47.69 | 51.38 |
| CDX88048 | Canola | nucleus | 53.33 | 50.73 |
| GSMUA_Achr5P12250_001 | Banana | cytosol | 48.21 | 50.54 |
| Zm00001d017386_P001 | Maize | cytosol | 48.21 | 50.54 |
| KXG31130 | Sorghum | cytosol | 50.77 | 50.51 |
| Zm00001d025932_P003 | Maize | mitochondrion | 51.79 | 50.5 |
| HORVU4Hr1G089540.2 | Barley | cytosol | 45.13 | 50.29 |
| TraesCSU01G033600.1 | Wheat | cytosol | 45.13 | 50.29 |
| TraesCS5A01G554600.1 | Wheat | cytosol | 45.64 | 50.28 |
| TraesCS4B01G393000.1 | Wheat | cytosol | 44.62 | 49.71 |
| Os04t0533300-02 | Rice | extracellular, plasma membrane | 51.28 | 47.85 |
| Zm00001d027330_P001 | Maize | extracellular, mitochondrion, plasma membrane | 44.62 | 47.54 |
| HORVU6Hr1G060700.5 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 44.62 | 45.55 |
| Solyc10g017540.2.1 | Tomato | nucleus | 43.59 | 44.97 |
| PGSC0003DMT400026584 | Potato | nucleus | 43.59 | 44.5 |
| Os02t0642200-01 | Rice | plasma membrane | 46.15 | 44.34 |
| HORVU1Hr1G045920.1 | Barley | nucleus | 22.05 | 40.57 |
| Os10t0503800-01 | Rice | nucleus | 25.64 | 37.59 |
| GSMUA_Achr5P10760_001 | Banana | cytosol | 51.28 | 37.31 |
| HORVU2Hr1G091680.3 | Barley | cytosol, plasma membrane | 51.28 | 33.33 |
| CDY66598 | Canola | cytosol, nucleus, plastid | 15.38 | 28.85 |
| CDX74343 | Canola | nucleus | 19.49 | 28.79 |
| CDX91900 | Canola | cytosol, mitochondrion, nucleus | 18.46 | 27.27 |
Protein Annotations
| EnsemblPlants:CDY27356 | EnsemblPlantsGene:GSBRNA2T00037293001 | InterPro:Remorin_C | InterPro:Remorin_N | ncoils:Coil | PANTHER:PTHR31775 |
| PANTHER:PTHR31775:SF2 | PFAM:PF03763 | PFAM:PF03766 | ProteinID:CDY27356 | ProteinID:CDY27356.1 | SEG:seg |
| UniParc:UPI0004EE5095 | UniProt:A0A078GPW5 | MapMan:35.1 | : | : | : |
Description
BnaC04g50490DBnaC04g50490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GPW5]
Coordinates
chrLK032203:+:230147..231771
Molecular Weight (calculated)
21605.8 Da
IEP (calculated)
8.189
GRAVY (calculated)
-0.878
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEQKTTKV DVESPAVLAP EKEPAPAPVE ASKDVAEEKV HDPPPPVESK ALTVVEKPIE EPAPKKSSSG SLDRDVKLAD LEKEKKTSFI KAWEESEKTK
101: AENKAQKKVS DVLAWENSQK AAIEARLRKI EEKLEKKKAE YGEKMKNKVA AIHKQAEEKR AMVEAKRGEE LLKAEEMAAK YRATGIVPKA TCGCF
101: AENKAQKKVS DVLAWENSQK AAIEARLRKI EEKLEKKKAE YGEKMKNKVA AIHKQAEEKR AMVEAKRGEE LLKAEEMAAK YRATGIVPKA TCGCF
001: MAEEQKTSKV DVESPAVLAP AKEPTPAPVE VADEKIHNPP PVESKALAVV EKPIEEHTPK KASSGSADRD VILADLEKEK KTSFIKAWEE SEKSKAENRA
101: QKKISDVHAW ENSKKAAVEA QLRKIEEKLE KKKAQYGEKM KNKVAAIHKL AEEKRAMVEA KKGEELLKAE EMGAKYRATG VVPKATCGCF
101: QKKISDVHAW ENSKKAAVEA QLRKIEEKLE KKKAQYGEKM KNKVAAIHKL AEEKRAMVEA KKGEELLKAE EMGAKYRATG VVPKATCGCF
Arabidopsis Description
DBPRemorin [Source:UniProtKB/Swiss-Prot;Acc:O80837]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.