Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019932.1-P | Field mustard | nucleus | 99.6 | 99.6 |
| CDY37975 | Canola | nucleus | 95.65 | 95.65 |
| CDY66046 | Canola | nucleus | 94.86 | 94.86 |
| CDY34890 | Canola | nucleus | 86.96 | 84.62 |
| CDY20630 | Canola | nucleus | 82.21 | 84.21 |
| AT1G10470.1 | Thale cress | nucleus | 85.77 | 83.78 |
| CDY07801 | Canola | nucleus | 87.35 | 83.4 |
| CDY20948 | Canola | nucleus | 81.42 | 81.42 |
| CDY45155 | Canola | nucleus | 67.59 | 75.0 |
| CDY30913 | Canola | nucleus | 68.38 | 72.69 |
| PGSC0003DMT400058306 | Potato | nucleus | 56.52 | 57.66 |
| CDY68129 | Canola | cytosol, nucleus, plastid | 40.71 | 57.54 |
| CDY21807 | Canola | cytosol, nucleus, peroxisome | 41.5 | 57.07 |
| Solyc05g006420.2.1 | Tomato | nucleus | 56.52 | 56.97 |
| CDY70164 | Canola | nucleus | 41.11 | 56.83 |
| CDY59856 | Canola | cytosol, nucleus, peroxisome | 41.11 | 56.83 |
| CDY54257 | Canola | cytosol, nucleus, peroxisome | 41.11 | 56.83 |
| CDY36905 | Canola | nucleus | 41.11 | 56.83 |
| VIT_01s0026g00940.t01 | Wine grape | nucleus | 49.41 | 56.56 |
| CDX84366 | Canola | nucleus | 41.5 | 55.26 |
| CDY00336 | Canola | nucleus | 41.5 | 55.26 |
| KRH45761 | Soybean | nucleus | 48.62 | 55.16 |
| CDX73122 | Canola | cytosol, golgi, nucleus | 37.94 | 54.24 |
| KRG99225 | Soybean | nucleus | 47.43 | 54.05 |
| KRH69443 | Soybean | nucleus | 50.99 | 53.75 |
| KRH74701 | Soybean | nucleus | 51.78 | 53.69 |
| CDX68161 | Canola | cytosol | 41.11 | 52.79 |
| CDX72141 | Canola | cytosol | 26.48 | 52.76 |
| CDY45402 | Canola | cytosol, golgi, peroxisome | 38.34 | 52.72 |
| CDX96681 | Canola | cytosol | 43.08 | 52.66 |
| CDY65526 | Canola | cytosol | 32.81 | 52.53 |
| CDY71200 | Canola | cytosol | 26.09 | 51.97 |
| CDY59626 | Canola | cytosol | 26.09 | 51.97 |
| CDY22469 | Canola | cytosol | 32.41 | 51.9 |
| CDX83788 | Canola | cytosol | 43.48 | 51.89 |
| CDY35445 | Canola | cytosol | 32.81 | 51.55 |
| CDX75990 | Canola | cytosol | 25.69 | 51.18 |
| CDY41014 | Canola | nucleus | 41.9 | 49.53 |
| CDY26701 | Canola | nucleus | 41.5 | 49.3 |
| CDX85860 | Canola | endoplasmic reticulum, golgi, vacuole | 39.53 | 45.87 |
| CDY27219 | Canola | cytosol, nucleus, plastid | 30.43 | 45.56 |
| CDX79942 | Canola | nucleus | 37.15 | 43.72 |
| CDY23856 | Canola | nucleus | 36.76 | 43.26 |
| CDY35419 | Canola | nucleus | 35.97 | 42.13 |
| CDY14761 | Canola | cytoskeleton, cytosol, nucleus | 36.76 | 41.89 |
| CDY22518 | Canola | nucleus | 35.57 | 41.47 |
| CDY06934 | Canola | cytosol | 36.36 | 41.44 |
| CDX76036 | Canola | nucleus | 35.18 | 39.56 |
| CDY06142 | Canola | cytosol | 36.76 | 39.41 |
| CDX67674 | Canola | cytosol | 36.36 | 39.32 |
| CDX72077 | Canola | cytosol | 36.36 | 39.15 |
| CDY30966 | Canola | cytosol | 34.78 | 37.93 |
Protein Annotations
| MapMan:11.4.2.5 | Gene3D:3.40.50.2300 | GO:A0A078DYA8 | EnsemblPlants:CDX93424 | ProteinID:CDX93424 | ProteinID:CDX93424.1 |
| InterPro:CheY-like_superfamily | ncoils:Coil | GO:GO:0000160 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00156087001 | InterPro:IPR001789 | PFAM:PF00072 | PFscan:PS50110 | PANTHER:PTHR43874 |
| PANTHER:PTHR43874:SF17 | SMART:SM00448 | SUPFAM:SSF52172 | InterPro:Sig_transdc_resp-reg_receiver | UniParc:UPI0004EF14A1 | SEG:seg |
Description
BnaA06g06240D
Coordinates
chrLK031876:+:142052..143597
Molecular Weight (calculated)
27669.9 Da
IEP (calculated)
4.397
GRAVY (calculated)
-0.308
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MASDGGVSCL RRSEMMSVGI GGIDSPPLDV DEVHVLAVDD SLVDRIVIER LLRITSCKVT AVDSGWRALE FLGIDNEKAS AELDRLKVDL IITDYCMPGM
101: TGYELLKKIK ESSSFRQVPV VIMSSENVIT RIDRCLEEGA EDFLLKPVKL ADVKRLRNYL TRDVQVSNGN KRKLPEDSPP LTLSHDSSDS SPPPSTLSPD
201: SSDSSSPPLS PVEIFSSPLL SPLDDEDDDV LTSSPESTPS PVRRQKMRSP GLD
101: TGYELLKKIK ESSSFRQVPV VIMSSENVIT RIDRCLEEGA EDFLLKPVKL ADVKRLRNYL TRDVQVSNGN KRKLPEDSPP LTLSHDSSDS SPPPSTLSPD
201: SSDSSSPPLS PVEIFSSPLL SPLDDEDDDV LTSSPESTPS PVRRQKMRSP GLD
001: MARDGGVSCL RRSEMMSVGG IGGIESAPLD LDEVHVLAVD DSLVDRIVIE RLLRITSCKV TAVDSGWRAL EFLGLDNEKA SAEFDRLKVD LIITDYCMPG
101: MTGYELLKKI KESSNFREVP VVIMSSENVL TRIDRCLEEG AQDFLLKPVK LADVKRLRSH LTKDVKLSNG NKRKLPEDSS SVNSSLPPPS PPLTISPESS
201: PPLTVSTESS DSSPPLSPVE IFSTSPLSSP IDDEDDDVLT SSSEESPIRR QKMRSPGLD
101: MTGYELLKKI KESSNFREVP VVIMSSENVL TRIDRCLEEG AQDFLLKPVK LADVKRLRSH LTKDVKLSNG NKRKLPEDSS SVNSSLPPPS PPLTISPESS
201: PPLTVSTESS DSSPPLSPVE IFSTSPLSSP IDDEDDDVLT SSSEESPIRR QKMRSPGLD
Arabidopsis Description
ARR4Two-component response regulator ARR4 [Source:UniProtKB/Swiss-Prot;Acc:O82798]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.