Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37282 | Canola | cytosol, nucleus, plastid | 98.05 | 98.05 |
| AT3G21510.1 | Thale cress | cytosol, nucleus, plastid | 95.45 | 95.45 |
| KRH11296 | Soybean | cytosol | 73.38 | 72.9 |
| KRH20965 | Soybean | cytosol | 72.73 | 72.26 |
| VIT_05s0020g02210.t01 | Wine grape | cytosol | 68.83 | 69.74 |
| KRH50948 | Soybean | cytosol | 70.13 | 69.68 |
| PGSC0003DMT400081747 | Potato | cytosol, nucleus, plastid | 66.88 | 68.21 |
| Solyc01g080540.2.1 | Tomato | cytosol, nucleus, plastid | 66.23 | 67.55 |
| GSMUA_Achr11P... | Banana | cytosol | 64.29 | 65.56 |
| GSMUA_Achr7P14570_001 | Banana | cytosol | 54.55 | 55.26 |
| GSMUA_AchrUn_... | Banana | cytosol | 52.6 | 53.29 |
| GSMUA_Achr7P14620_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 52.6 | 53.29 |
| CDX74472 | Canola | cytosol | 52.6 | 52.26 |
| CDY37867 | Canola | cytosol | 51.95 | 51.61 |
| CDX89890 | Canola | cytosol | 53.9 | 48.82 |
| CDY71948 | Canola | cytosol | 9.09 | 48.28 |
| CDY57687 | Canola | cytosol | 47.4 | 47.4 |
| CDY19992 | Canola | cytosol | 47.4 | 46.79 |
| CDY00096 | Canola | cytosol | 47.4 | 46.79 |
| CDX86370 | Canola | cytosol | 47.4 | 46.79 |
| CDX85268 | Canola | cytosol | 47.4 | 46.79 |
| CDY56195 | Canola | cytosol, nucleus, plastid | 37.66 | 46.77 |
| CDY54309 | Canola | cytosol | 46.75 | 46.75 |
| CDY30166 | Canola | cytosol | 38.96 | 45.11 |
| CDX82406 | Canola | cytosol | 37.66 | 43.61 |
| CDX75878 | Canola | cytosol | 37.01 | 42.86 |
Protein Annotations
| Gene3D:1.20.120.160 | MapMan:11.4.2.2 | GO:A0A078G1U5 | UniProt:A0A078G1U5 | EnsemblPlants:CDY19286 | ProteinID:CDY19286 |
| ProteinID:CDY19286.1 | GO:GO:0000160 | GO:GO:0003674 | GO:GO:0004871 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00006623001 |
| InterPro:HPT_dom_sf | InterPro:IPR008207 | InterPro:IPR036641 | PFAM:PF01627 | PFscan:PS50894 | PANTHER:PTHR28242 |
| PANTHER:PTHR28242:SF5 | SUPFAM:SSF47226 | InterPro:Sig_transdc_His_kin_Hpt_dom | UniParc:UPI0004EB38A8 | SEG:seg | : |
Description
BnaC01g31940DBnaC01g31940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1U5]
Coordinates
chrLK032094:-:212090..213560
Molecular Weight (calculated)
17593.1 Da
IEP (calculated)
4.915
GRAVY (calculated)
-0.228
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MELVQMQKGL QDYTKSLFLD GVLDSQFLQL QQLQDESNPD FVSQVVTLFF QDSDRILNDL SLSLDQQVVD FKKVDPHVHQ LKGSSSSIGA QRVKNACVVF
101: RSFCEQQNVE GCHRCLQQVK QEYYLVKNRL ETLFKLEQQI VASGGMIPAM ELGF
101: RSFCEQQNVE GCHRCLQQVK QEYYLVKNRL ETLFKLEQQI VASGGMIPAM ELGF
001: MDLVQKQKSL QDYTKSLFLE GILDSQFLQL QQLQDESNPD FVSQVVTLFF QDSDRILNDL SLSLDQQVVD FKKVDPHVHQ LKGSSSSIGA QRVKNACVVF
101: RSFCEQQNVE ACHRCLQQVK QEYYLVKNRL ETLFKLEQQI VASGGMIPAV ELGF
101: RSFCEQQNVE ACHRCLQQVK QEYYLVKNRL ETLFKLEQQI VASGGMIPAV ELGF
Arabidopsis Description
AHP1AHP1 [Source:UniProtKB/TrEMBL;Acc:A0A178V856]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.