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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70289
CDX70318
CDX80113
CDX80884
CDX85268
CDX86370
CDX86641
CDY00096
CDY07498
CDY10360
CDY10393
CDY11267
CDY15498
CDY19286
CDY19992
CDY21123
CDY30004
CDY35503
CDY37282
CDY49629
CDY49633
CDY63851
CDY64702
CDY66567
CDY67999
CDY70443
CDY70681

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G66340.1 CDX86641 AT1G04310.1 18577522
AT1G66340.1 CDY15498 AT1G04310.1 18577522
AT1G66340.1 CDY67999 AT1G04310.1 18577522
AT1G66340.1 CDY70681 AT1G04310.1 18577522
AT1G66340.1 CDY07498 AT1G66340.1 18384742
AT1G66340.1 CDY49629 AT1G66340.1 18384742
AT1G66340.1 CDY49633 AT1G66340.1 18384742
AT1G66340.1 CDY66567 AT1G66340.1 18384742
AT1G66340.1 CDY07498 AT1G66340.1 18577522
AT1G66340.1 CDY49629 AT1G66340.1 18577522
AT1G66340.1 CDY49633 AT1G66340.1 18577522
AT1G66340.1 CDY66567 AT1G66340.1 18577522
AT1G66340.1 CDX80113 AT2G40940.1 18577522
AT1G66340.1 CDY63851 AT2G40940.1 18577522
AT1G66340.1 CDY21123 AT3G04580.1 18577522
AT1G66340.1 CDY30004 AT3G04580.1 18577522
AT1G66340.1 CDY64702 AT3G04580.1 18577522
AT1G66340.1 CDY19286 AT3G21510.1 10930573
AT1G66340.1 CDY37282 AT3G21510.1 10930573
AT1G66340.1 CDY19286 AT3G21510.1 18384742
AT1G66340.1 CDY37282 AT3G21510.1 18384742
AT1G66340.1 CDY35503 AT3G23150.1 18577522
AT1G66340.1 CDY70443 AT3G23150.1 18577522
AT1G66340.1 CDX85268 AT3G29350.1 10930573
AT1G66340.1 CDX86370 AT3G29350.1 10930573
AT1G66340.1 CDY00096 AT3G29350.1 10930573
AT1G66340.1 CDY19992 AT3G29350.1 10930573
AT1G66340.1 CDX70318 AT5G03280.1 19769567
AT1G66340.1 CDY10393 AT5G03280.1 19769567
AT1G66340.1 CDX70289 AT5G03730.1 12837948
AT1G66340.1 CDX80884 AT5G03730.1 12837948
AT1G66340.1 CDY10360 AT5G03730.1 12837948
AT1G66340.1 CDY11267 AT5G03730.1 12837948
AT1G66340.1 CDX70289 AT5G03730.1 8417317
AT1G66340.1 CDX80884 AT5G03730.1 8417317
AT1G66340.1 CDY10360 AT5G03730.1 8417317
AT1G66340.1 CDY11267 AT5G03730.1 8417317
AT1G66340.1 CDX70289 AT5G03730.1 9560288
AT1G66340.1 CDX80884 AT5G03730.1 9560288
AT1G66340.1 CDY10360 AT5G03730.1 9560288
AT1G66340.1 CDY11267 AT5G03730.1 9560288
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY07498 Canola cytosol 99.59 99.46
AT1G66340.1 Thale cress plasma membrane 96.6 96.21
CDY49629 Canola cytosol 17.14 90.65
CDY66567 Canola cytosol 17.41 87.67
VIT_19s0093g00580.t01 Wine grape cytosol 83.27 82.59
KRH27542 Soybean cytosol 82.86 82.41
KRH36433 Soybean cytosol 82.31 81.76
PGSC0003DMT400071109 Potato cytosol, endoplasmic reticulum, plasma membrane 79.59 79.48
Solyc12g011330.2.1 Tomato endoplasmic reticulum, plasma membrane, plastid 81.36 79.31
PGSC0003DMT400020285 Potato endoplasmic reticulum, plasma membrane, plastid 81.09 79.05
Solyc07g056580.2.1 Tomato cytosol, endoplasmic reticulum, plasma membrane 77.55 77.45
CDX80113 Canola plasma membrane 56.19 67.37
CDY63851 Canola plasma membrane 56.19 66.29
CDY35503 Canola plasma membrane 40.0 37.74
CDY70443 Canola plasma membrane 39.73 37.44
CDY30004 Canola plasma membrane 37.41 35.9
CDY67999 Canola plasma membrane 27.89 33.12
CDX86641 Canola endoplasmic reticulum 26.8 33.11
CDY70681 Canola endoplasmic reticulum 27.76 33.06
CDY64702 Canola mitochondrion 4.9 27.48
CDY21123 Canola cytosol 10.2 25.0
CDX78398 Canola cytosol 14.56 17.04
CDX97049 Canola nucleus 20.14 16.52
CDX69808 Canola nucleus 20.14 16.48
CDY67688 Canola nucleus 19.86 16.03
CDX90318 Canola cytosol 6.67 15.91
CDY40112 Canola nucleus 19.73 15.83
CDY03909 Canola endoplasmic reticulum, golgi, plasma membrane 21.5 15.78
CDY03101 Canola cytosol, peroxisome, plasma membrane 22.59 15.78
CDY17631 Canola cytosol, peroxisome, plasma membrane 22.59 15.78
CDY15717 Canola endoplasmic reticulum, golgi, plasma membrane 21.77 15.67
CDY03102 Canola cytosol 1.5 15.28
CDY03106 Canola cytosol 1.5 15.28
CDX93074 Canola plasma membrane 22.18 14.86
CDY50037 Canola endoplasmic reticulum, golgi, plasma membrane 22.18 14.83
CDX74635 Canola cytosol, golgi, plasma membrane 21.5 13.75
CDY47297 Canola plasma membrane 21.36 13.66
CDY15498 Canola plasma membrane 30.07 12.92
CDY12735 Canola endoplasmic reticulum, golgi, plasma membrane 17.55 12.11
CDY01193 Canola endoplasmic reticulum, golgi, plasma membrane 17.55 12.08
CDY20843 Canola nucleus 18.23 11.23
CDX80103 Canola endoplasmic reticulum, golgi, plasma membrane 17.01 11.23
CDY24380 Canola nucleus 18.23 11.22
CDY55381 Canola endoplasmic reticulum, plasma membrane, plastid 17.28 11.12
CDX70367 Canola endoplasmic reticulum, golgi 19.46 10.42
CDX78397 Canola cytosol 5.31 10.13
Protein Annotations
Gene3D:1.10.287.130MapMan:11.5.2.1Gene3D:3.30.450.40Gene3D:3.30.565.10Gene3D:3.40.50.2300GO:A0A078IKP3
UniProt:A0A078IKP3EnsemblPlants:CDY49633ProteinID:CDY49633ProteinID:CDY49633.1InterPro:CheY-like_superfamilyInterPro:ETR
InterPro:GAFInterPro:GAF-like_dom_sfGO:GO:0000155GO:GO:0000160GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0004673GO:GO:0004871GO:GO:0005488GO:GO:0005515GO:GO:0005524
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005789
GO:GO:0006464GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009719
GO:GO:0009873GO:GO:0009987GO:GO:0010105GO:GO:0016020GO:GO:0016021GO:GO:0016301
GO:GO:0016310GO:GO:0016740GO:GO:0016772GO:GO:0018106GO:GO:0019538GO:GO:0023014
GO:GO:0038023GO:GO:0038199GO:GO:0046872GO:GO:0050896GO:GO:0051740EnsemblPlantsGene:GSBRNA2T00093497001
InterPro:HATPase_CInterPro:HATPase_C_sfInterPro:HisK_dim/PInterPro:HisK_dim/P_sfInterPro:His_kinase_domInterPro:IPR001789
InterPro:IPR005467InterPro:IPR029016InterPro:IPR036890PFAM:PF00072PFAM:PF00512PFAM:PF01590
PFAM:PF02518PIRSF:PIRSF026389PRINTS:PR00344PFscan:PS50109PFscan:PS50110PANTHER:PTHR24423
PANTHER:PTHR24423:SF598SMART:SM00065SMART:SM00387SMART:SM00388SMART:SM00448SUPFAM:SSF47384
SUPFAM:SSF52172SUPFAM:SSF55781SUPFAM:SSF55874InterPro:Sig_transdc_His_kin-like_CInterPro:Sig_transdc_resp-reg_receiverTMHMM:TMhelix
UniParc:UPI0004EF2125SEG:seg::::
Description
BnaCnng17850DBnaCnng17850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKP3]
Coordinates
chrLK032849:-:59343..62921
Molecular Weight (calculated)
82202.1 Da
IEP (calculated)
7.828
GRAVY (calculated)
0.136
Length
735 amino acids
Sequence
(BLAST)
001: MEVCNCIEPQ WPADELLMKY QYISDFFIAV AYFSIPLELI YFVKKSAVFP YRWVLVQFGA FIVLCGATHL INLWTFTTHS RTVALVMTTA KVLTAVVSCA
101: TALMLVHIIP DLLSVKTREL FLKNKAAELD REMGLIRTQE ETGRHVRMLT HEIRSTLDRH TILKTTLVEL GRTLALEECA LWMPTRTGLE LQLSYTLRQQ
201: HPVEYTVPIQ LPVINQVFGT SRAVKISPNS PVARLRPVSG KYLLGEVVAV RVPLLHLSNF QINDWPELST KRYALMVLML PSDSARQWHV HELELVEVVA
301: DQVAVALSHA AILEESMRAR DLLMEQNVAL DIARREAETA IRARNDFLAV MNHEMRTPMH AIIALSSLLQ ETELTPEQRL MVETVLKSSS LLATLMNDVL
401: DLSRLEDGSL QLELGTFNLH TLFREVLNLI KPIAVVKKLP ITLNLAPDLP EFVVGDEKRL MQIILNIVGN AVKFSKQGSI SVTALVTKSD NRAPPDFFVV
501: PTGSHFYLRV KVKDLGAGIN PQDIPKLFTK FAQTQSLATR SSGGSGLGLA ISKRFVNLME GNIWIESEGV GKGCTAIFDV KLAISNESKQ SGIPKVPANP
601: QHVNFAGLKV LVMDENGVSR MVTKGLLVHL GCEVTTVSSN EECLRVVSHE HRVVFMDVCT PGVENYQIAL RIHEKFTKRH QRPLLVALTG NTDKSTKEKC
701: MSFGLDGVLL KPVSLDNMRN VLSDLLEHRV LYEAM
Best Arabidopsis Sequence Match ( AT1G66340.1 )
(BLAST)
001: MEVCNCIEPQ WPADELLMKY QYISDFFIAI AYFSIPLELI YFVKKSAVFP YRWVLVQFGA FIVLCGATHL INLWTFTTHS RTVALVMTTA KVLTAVVSCA
101: TALMLVHIIP DLLSVKTREL FLKNKAAELD REMGLIRTQE ETGRHVRMLT HEIRSTLDRH TILKTTLVEL GRTLALEECA LWMPTRTGLE LQLSYTLRHQ
201: HPVEYTVPIQ LPVINQVFGT SRAVKISPNS PVARLRPVSG KYMLGEVVAV RVPLLHLSNF QINDWPELST KRYALMVLML PSDSARQWHV HELELVEVVA
301: DQVAVALSHA AILEESMRAR DLLMEQNVAL DLARREAETA IRARNDFLAV MNHEMRTPMH AIIALSSLLQ ETELTPEQRL MVETILKSSN LLATLMNDVL
401: DLSRLEDGSL QLELGTFNLH TLFREVLNLI KPIAVVKKLP ITLNLAPDLP EFVVGDEKRL MQIILNIVGN AVKFSKQGSI SVTALVTKSD TRAADFFVVP
501: TGSHFYLRVK VKDSGAGINP QDIPKIFTKF AQTQSLATRS SGGSGLGLAI SKRFVNLMEG NIWIESDGLG KGCTAIFDVK LGISERSNES KQSGIPKVPA
601: IPRHSNFTGL KVLVMDENGV SRMVTKGLLV HLGCEVTTVS SNEECLRVVS HEHKVVFMDV CMPGVENYQI ALRIHEKFTK QRHQRPLLVA LSGNTDKSTK
701: EKCMSFGLDG VLLKPVSLDN IRDVLSDLLE PRVLYEGM
Arabidopsis Description
ETR1Ethylene receptor 1 [Source:UniProtKB/Swiss-Prot;Acc:P49333]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.