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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane

Predictor Summary:
  • nucleus 1
  • vacuole 2
  • endoplasmic reticulum 3
  • extracellular 1
  • plasma membrane 2
  • golgi 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, plasma membrane, plastid
Any Predictor:nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:vacuole
MultiLoc:endoplasmic reticulum
Plant-mPloc:endoplasmic reticulum
PProwler:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g014770.1.1
Solyc01g080540.2.1
Solyc04g025660.1.1
Solyc04g049320.1.1
Solyc04g049990.1.1
Solyc04g064840.1.1
Solyc05g055070.2.1
Solyc06g036450.1.1
Solyc06g051610.1.1
Solyc06g053710.2.1
Solyc06g084410.2.1
Solyc07g056580.2.1
Solyc08g068360.1.1
Solyc09g005490.1.1
Solyc09g005540.1.1
Solyc09g007870.2.1
Solyc09g009090.2.1
Solyc09g011680.1.1
Solyc09g065310.1.1
Solyc09g075440.2.1
Solyc09g082910.1.1
Solyc09g089610.2.1
Solyc10g083610.1.1
Solyc10g085570.1.1
Solyc11g006180.1.1
Solyc11g065590.1.1
Solyc12g011330.2.1
Solyc12g027610.1.1
Solyc12g038690.1.1
Solyc12g044870.1.1
Solyc12g062760.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G66340.1 Solyc06g053710.2.1 AT1G04310.1 18577522
AT1G66340.1 Solyc09g089610.2.1 AT1G04310.1 18577522
AT1G66340.1 Solyc07g056580.2.1 AT1G66340.1 18384742
AT1G66340.1 Solyc12g011330.2.1 AT1G66340.1 18384742
AT1G66340.1 Solyc07g056580.2.1 AT1G66340.1 18577522
AT1G66340.1 Solyc12g011330.2.1 AT1G66340.1 18577522
AT1G66340.1 Solyc09g075440.2.1 AT2G40940.1 18577522
AT1G66340.1 Solyc01g014770.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc04g025660.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc04g049320.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc04g049990.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc04g064840.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc05g055070.2.1 AT3G04580.1 18577522
AT1G66340.1 Solyc06g036450.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc06g051610.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc08g068360.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc09g011680.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc09g065310.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc09g082910.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc11g006180.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc11g065590.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc12g027610.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc12g038690.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc12g044870.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc12g062760.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc01g080540.2.1 AT3G21510.1 10930573
AT1G66340.1 Solyc01g080540.2.1 AT3G21510.1 18384742
AT1G66340.1 Solyc06g053710.2.1 AT3G23150.1 18577522
AT1G66340.1 Solyc09g089610.2.1 AT3G23150.1 18577522
AT1G66340.1 Solyc06g084410.2.1 AT3G29350.1 10930573
AT1G66340.1 Solyc09g005490.1.1 AT5G03280.1 19769567
AT1G66340.1 Solyc09g005540.1.1 AT5G03280.1 19769567
AT1G66340.1 Solyc09g007870.2.1 AT5G03280.1 19769567
AT1G66340.1 Solyc09g009090.2.1 AT5G03730.1 12837948
AT1G66340.1 Solyc10g083610.1.1 AT5G03730.1 12837948
AT1G66340.1 Solyc10g085570.1.1 AT5G03730.1 12837948
AT1G66340.1 Solyc09g009090.2.1 AT5G03730.1 8417317
AT1G66340.1 Solyc10g083610.1.1 AT5G03730.1 8417317
AT1G66340.1 Solyc10g085570.1.1 AT5G03730.1 8417317
AT1G66340.1 Solyc09g009090.2.1 AT5G03730.1 9560288
AT1G66340.1 Solyc10g083610.1.1 AT5G03730.1 9560288
AT1G66340.1 Solyc10g085570.1.1 AT5G03730.1 9560288
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400020285 Potato endoplasmic reticulum, plasma membrane, plastid 98.14 98.14
Solyc07g056580.2.1 Tomato cytosol, endoplasmic reticulum, plasma membrane 82.63 84.65
VIT_19s0093g00580.t01 Wine grape cytosol 82.1 83.54
KRH27542 Soybean cytosol 81.3 82.95
KRH36433 Soybean cytosol 80.9 82.43
AT1G66340.1 Thale cress plasma membrane 79.71 81.44
CDY07498 Canola cytosol 79.44 81.39
CDY49633 Canola cytosol 79.31 81.36
Bra004160.1-P Field mustard cytosol 79.31 81.25
Solyc09g075440.2.1 Tomato plasma membrane 56.9 67.56
CDY49629 Canola cytosol 11.41 61.87
CDY66567 Canola cytosol 11.54 59.59
Solyc06g051610.1.1 Tomato cytosol 9.15 41.57
Solyc04g049990.1.1 Tomato cytosol 6.9 39.69
Solyc06g036450.1.1 Tomato cytosol 5.17 39.0
Solyc06g053710.2.1 Tomato plasma membrane 38.46 38.11
Solyc09g082910.1.1 Tomato cytosol 8.36 37.95
Solyc11g065590.1.1 Tomato cytosol 4.51 37.78
Solyc11g006180.1.1 Tomato plasma membrane 37.67 37.03
Solyc12g044870.1.1 Tomato cytosol 7.96 36.14
Solyc05g055070.2.1 Tomato plasma membrane 35.68 36.11
Solyc09g089610.2.1 Tomato endoplasmic reticulum 34.75 34.75
Solyc01g014770.1.1 Tomato cytosol 5.84 32.84
Solyc12g038690.1.1 Tomato cytosol 2.79 32.81
Solyc04g049320.1.1 Tomato cytosol, plastid, vacuole 4.77 32.73
Solyc02g083670.2.1 Tomato cytosol 3.18 32.0
Solyc09g011680.1.1 Tomato cytosol 4.38 31.73
Solyc04g064840.1.1 Tomato endoplasmic reticulum 7.43 30.94
Solyc04g025660.1.1 Tomato cytosol 4.24 30.77
Solyc08g068360.1.1 Tomato cytosol 4.77 30.0
Solyc09g065310.1.1 Tomato cytosol 2.52 29.69
Solyc12g027610.1.1 Tomato cytosol 7.56 29.23
Solyc12g062760.1.1 Tomato cytosol 3.32 28.41
Solyc04g008110.2.1 Tomato plasma membrane 22.28 16.92
Solyc08g068960.2.1 Tomato cytosol 21.49 15.91
Solyc05g015610.2.1 Tomato endoplasmic reticulum, golgi, plasma membrane 21.75 15.89
Solyc07g047770.2.1 Tomato golgi 22.15 13.52
Solyc12g099720.1.1 Tomato endoplasmic reticulum, extracellular, plasma membrane 13.13 13.38
Solyc02g083680.1.1 Tomato plastid 13.79 11.83
Protein Annotations
Gene3D:1.10.287.130MapMan:11.5.2.1Gene3D:3.30.450.40Gene3D:3.30.565.10Gene3D:3.40.50.2300UniProt:A0A0J9YZQ0
InterPro:CheY-like_superfamilyInterPro:ETRInterPro:GAFInterPro:GAF-like_dom_sfGO:GO:0000155GO:GO:0000160
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004673GO:GO:0004871GO:GO:0005488
GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005783GO:GO:0005789GO:GO:0006464GO:GO:0007154GO:GO:0007165GO:GO:0008150
GO:GO:0008152GO:GO:0009719GO:GO:0009873GO:GO:0009987GO:GO:0010105GO:GO:0016020
GO:GO:0016021GO:GO:0016301GO:GO:0016310GO:GO:0016740GO:GO:0016772GO:GO:0018106
GO:GO:0019538GO:GO:0023014GO:GO:0038023GO:GO:0038199GO:GO:0046872GO:GO:0050896
GO:GO:0051740InterPro:HATPase_CInterPro:HATPase_C_sfInterPro:HisK_dim/PInterPro:HisK_dim/P_sfInterPro:His_kinase_dom
InterPro:IPR001789InterPro:IPR005467InterPro:IPR029016InterPro:IPR036890PFAM:PF00072PFAM:PF00512
PFAM:PF01590PFAM:PF02518PIRSF:PIRSF026389PRINTS:PR00344PFscan:PS50109PFscan:PS50110
PANTHER:PTHR24423PANTHER:PTHR24423:SF598SMART:SM00065SMART:SM00387SMART:SM00388SMART:SM00448
SUPFAM:SSF47384SUPFAM:SSF52172SUPFAM:SSF55781SUPFAM:SSF55874InterPro:Sig_transdc_His_kin-like_CInterPro:Sig_transdc_resp-reg_receiver
EnsemblPlantsGene:Solyc12g011330.2EnsemblPlants:Solyc12g011330.2.1TMHMM:TMhelixUniParc:UPI000016D931SEG:seg:
Description
No Description!
Coordinates
chr12:+:4164579..4175035
Molecular Weight (calculated)
84180.8 Da
IEP (calculated)
8.003
GRAVY (calculated)
0.176
Length
754 amino acids
Sequence
(BLAST)
001: MGSLLRMNRL LSSIVESCNC IIDPQLPADD LLMKYQYISD FFIALAYFSI PVELIYFVKK SAVFPYRWVL VQFGAFIVLC GATHLINLWT FNMHTRNVAI
101: VMTTAKALTA LVSCITALML VHIIPDLLSV KTRELFLKKK AAQLDREMGI IRTQEETGRH VRMLTHEIRS TLDRHTILKT TLVELGRTLA LEECALWMPT
201: RTGLELQLSY TLRHQNPVGL TVPIQLPVIN QVFGTNHVVK ISPNSPVARL RPAGKYMPGE VVAVRVPLLH LSNFQINDWP ELSTKRYALM VLMLPSDSAR
301: QWHVHELELV EVVADQVAVA LSHAAILEES MRARDLLMEQ NVALDLARRE AEMAVRARND FLAVMNHEMR TPMHAIIALS SLLQETDLTP EQRLMVETIL
401: KSSNLLATLI NDVLDLSRLE DGSLQLDIGT FNLHALFREV HSLIKPIASV KKLFVTLSLS SDLPEYVIGD EKRLMQILLN VVGNAVKFSK EGNVSISAFV
501: AKSDSLRDPR APEFFAVPSE NHFYLRVQIK DTGIGITPQD IPNLFSKFTQ SQALATTNSG GTGLGLAICK RFVNLMEGHI WIESEGLGKG STAIFIIKLG
601: IPGRANESKL PFVTKLPANH TQMSFQGLKV LVMDENGVSR MVTKGLLTHL GCDVTTVGSR DECLRVVTHE HKVVIMDVSM QGIDCYEVAV VIHERFGKRH
701: GRPLIVALTG NTDRVTKENC MRVGMDGVIL KPVSVYKMRS VLSELLEHGV VLES
Best Arabidopsis Sequence Match ( AT1G66340.1 )
(BLAST)
001: MEVCNCIEPQ WPADELLMKY QYISDFFIAI AYFSIPLELI YFVKKSAVFP YRWVLVQFGA FIVLCGATHL INLWTFTTHS RTVALVMTTA KVLTAVVSCA
101: TALMLVHIIP DLLSVKTREL FLKNKAAELD REMGLIRTQE ETGRHVRMLT HEIRSTLDRH TILKTTLVEL GRTLALEECA LWMPTRTGLE LQLSYTLRHQ
201: HPVEYTVPIQ LPVINQVFGT SRAVKISPNS PVARLRPVSG KYMLGEVVAV RVPLLHLSNF QINDWPELST KRYALMVLML PSDSARQWHV HELELVEVVA
301: DQVAVALSHA AILEESMRAR DLLMEQNVAL DLARREAETA IRARNDFLAV MNHEMRTPMH AIIALSSLLQ ETELTPEQRL MVETILKSSN LLATLMNDVL
401: DLSRLEDGSL QLELGTFNLH TLFREVLNLI KPIAVVKKLP ITLNLAPDLP EFVVGDEKRL MQIILNIVGN AVKFSKQGSI SVTALVTKSD TRAADFFVVP
501: TGSHFYLRVK VKDSGAGINP QDIPKIFTKF AQTQSLATRS SGGSGLGLAI SKRFVNLMEG NIWIESDGLG KGCTAIFDVK LGISERSNES KQSGIPKVPA
601: IPRHSNFTGL KVLVMDENGV SRMVTKGLLV HLGCEVTTVS SNEECLRVVS HEHKVVFMDV CMPGVENYQI ALRIHEKFTK QRHQRPLLVA LSGNTDKSTK
701: EKCMSFGLDG VLLKPVSLDN IRDVLSDLLE PRVLYEGM
Arabidopsis Description
ETR1Ethylene receptor 1 [Source:UniProtKB/Swiss-Prot;Acc:P49333]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.