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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane

Predictor Summary:
  • nucleus 1
  • vacuole 2
  • cytosol 1
  • endoplasmic reticulum 3
  • extracellular 1
  • plasma membrane 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, endoplasmic reticulum, plasma membrane
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:endoplasmic reticulum
PProwler:secretory
WoLF PSORT:endoplasmic reticulum
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g014770.1.1
Solyc01g080540.2.1
Solyc04g025660.1.1
Solyc04g049320.1.1
Solyc04g049990.1.1
Solyc04g064840.1.1
Solyc05g055070.2.1
Solyc06g036450.1.1
Solyc06g051610.1.1
Solyc06g053710.2.1
Solyc06g084410.2.1
Solyc07g056580.2.1
Solyc08g068360.1.1
Solyc09g005490.1.1
Solyc09g005540.1.1
Solyc09g007870.2.1
Solyc09g009090.2.1
Solyc09g011680.1.1
Solyc09g065310.1.1
Solyc09g075440.2.1
Solyc09g082910.1.1
Solyc09g089610.2.1
Solyc10g083610.1.1
Solyc10g085570.1.1
Solyc11g006180.1.1
Solyc11g065590.1.1
Solyc12g011330.2.1
Solyc12g027610.1.1
Solyc12g038690.1.1
Solyc12g044870.1.1
Solyc12g062760.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G66340.1 Solyc06g053710.2.1 AT1G04310.1 18577522
AT1G66340.1 Solyc09g089610.2.1 AT1G04310.1 18577522
AT1G66340.1 Solyc07g056580.2.1 AT1G66340.1 18384742
AT1G66340.1 Solyc12g011330.2.1 AT1G66340.1 18384742
AT1G66340.1 Solyc07g056580.2.1 AT1G66340.1 18577522
AT1G66340.1 Solyc12g011330.2.1 AT1G66340.1 18577522
AT1G66340.1 Solyc09g075440.2.1 AT2G40940.1 18577522
AT1G66340.1 Solyc01g014770.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc04g025660.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc04g049320.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc04g049990.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc04g064840.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc05g055070.2.1 AT3G04580.1 18577522
AT1G66340.1 Solyc06g036450.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc06g051610.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc08g068360.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc09g011680.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc09g065310.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc09g082910.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc11g006180.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc11g065590.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc12g027610.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc12g038690.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc12g044870.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc12g062760.1.1 AT3G04580.1 18577522
AT1G66340.1 Solyc01g080540.2.1 AT3G21510.1 10930573
AT1G66340.1 Solyc01g080540.2.1 AT3G21510.1 18384742
AT1G66340.1 Solyc06g053710.2.1 AT3G23150.1 18577522
AT1G66340.1 Solyc09g089610.2.1 AT3G23150.1 18577522
AT1G66340.1 Solyc06g084410.2.1 AT3G29350.1 10930573
AT1G66340.1 Solyc09g005490.1.1 AT5G03280.1 19769567
AT1G66340.1 Solyc09g005540.1.1 AT5G03280.1 19769567
AT1G66340.1 Solyc09g007870.2.1 AT5G03280.1 19769567
AT1G66340.1 Solyc09g009090.2.1 AT5G03730.1 12837948
AT1G66340.1 Solyc10g083610.1.1 AT5G03730.1 12837948
AT1G66340.1 Solyc10g085570.1.1 AT5G03730.1 12837948
AT1G66340.1 Solyc09g009090.2.1 AT5G03730.1 8417317
AT1G66340.1 Solyc10g083610.1.1 AT5G03730.1 8417317
AT1G66340.1 Solyc10g085570.1.1 AT5G03730.1 8417317
AT1G66340.1 Solyc09g009090.2.1 AT5G03730.1 9560288
AT1G66340.1 Solyc10g083610.1.1 AT5G03730.1 9560288
AT1G66340.1 Solyc10g085570.1.1 AT5G03730.1 9560288
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400071109 Potato cytosol, endoplasmic reticulum, plasma membrane 96.06 96.06
Solyc12g011330.2.1 Tomato endoplasmic reticulum, plasma membrane, plastid 84.65 82.63
KRH27542 Soybean cytosol 79.35 79.03
VIT_19s0093g00580.t01 Wine grape cytosol 79.35 78.81
KRH36433 Soybean cytosol 78.94 78.51
CDY07498 Canola cytosol 77.58 77.58
CDY49633 Canola cytosol 77.45 77.55
Bra004160.1-P Field mustard cytosol 77.45 77.45
AT1G66340.1 Thale cress plasma membrane 77.17 76.96
Solyc09g075440.2.1 Tomato plasma membrane 56.52 65.51
CDY49629 Canola cytosol 10.19 53.96
CDY66567 Canola cytosol 10.33 52.05
Solyc06g051610.1.1 Tomato cytosol 8.83 39.16
Solyc11g065590.1.1 Tomato cytosol 4.62 37.78
Solyc04g049990.1.1 Tomato cytosol 6.66 37.4
Solyc06g036450.1.1 Tomato cytosol 5.03 37.0
Solyc06g053710.2.1 Tomato plasma membrane 38.04 36.79
Solyc11g006180.1.1 Tomato plasma membrane 38.04 36.51
Solyc05g055070.2.1 Tomato plasma membrane 36.14 35.7
Solyc09g082910.1.1 Tomato cytosol 8.02 35.54
Solyc09g089610.2.1 Tomato endoplasmic reticulum 35.05 34.22
Solyc12g044870.1.1 Tomato cytosol 7.61 33.73
Solyc01g014770.1.1 Tomato cytosol 5.98 32.84
Solyc09g011680.1.1 Tomato cytosol 4.62 32.69
Solyc12g038690.1.1 Tomato cytosol 2.72 31.25
Solyc02g083670.2.1 Tomato cytosol 3.12 30.67
Solyc04g049320.1.1 Tomato cytosol, plastid, vacuole 4.48 30.0
Solyc04g025660.1.1 Tomato cytosol 4.21 29.81
Solyc08g068360.1.1 Tomato cytosol 4.62 28.33
Solyc12g027610.1.1 Tomato cytosol 7.47 28.21
Solyc04g064840.1.1 Tomato endoplasmic reticulum 6.93 28.18
Solyc09g065310.1.1 Tomato cytosol 2.45 28.12
Solyc12g062760.1.1 Tomato cytosol 3.26 27.27
Solyc04g008110.2.1 Tomato plasma membrane 22.15 16.41
Solyc05g015610.2.1 Tomato endoplasmic reticulum, golgi, plasma membrane 22.15 15.79
Solyc08g068960.2.1 Tomato cytosol 20.38 14.73
Solyc12g099720.1.1 Tomato endoplasmic reticulum, extracellular, plasma membrane 13.72 13.65
Solyc07g047770.2.1 Tomato golgi 22.01 13.12
Solyc02g083680.1.1 Tomato plastid 13.72 11.49
Protein Annotations
Gene3D:1.10.287.130MapMan:11.5.2.1Gene3D:3.30.450.40Gene3D:3.30.565.10Gene3D:3.40.50.2300ProteinID:AAU34074.1
InterPro:CheY-like_superfamilyInterPro:ETRInterPro:GAFInterPro:GAF-like_dom_sfGO:GO:0000155GO:GO:0000160
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004673GO:GO:0004871GO:GO:0005488
GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005783GO:GO:0005789GO:GO:0006464GO:GO:0007154GO:GO:0007165GO:GO:0008150
GO:GO:0008152GO:GO:0009719GO:GO:0009873GO:GO:0009987GO:GO:0010105GO:GO:0016020
GO:GO:0016021GO:GO:0016301GO:GO:0016310GO:GO:0016740GO:GO:0016772GO:GO:0018106
GO:GO:0019538GO:GO:0023014GO:GO:0038023GO:GO:0038199GO:GO:0046872GO:GO:0050896
GO:GO:0051740InterPro:HATPase_CInterPro:HATPase_C_sfInterPro:HisK_dim/PInterPro:HisK_dim/P_sfInterPro:His_kinase_dom
InterPro:IPR001789InterPro:IPR005467InterPro:IPR029016InterPro:IPR036890PFAM:PF00072PFAM:PF00512
PFAM:PF01590PFAM:PF02518PIRSF:PIRSF026389PRINTS:PR00344PFscan:PS50109PFscan:PS50110
PANTHER:PTHR24423PANTHER:PTHR24423:SF598UniProt:Q5QG25SMART:SM00065SMART:SM00387SMART:SM00388
SMART:SM00448SUPFAM:SSF47384SUPFAM:SSF52172SUPFAM:SSF55781SUPFAM:SSF55874InterPro:Sig_transdc_His_kin-like_C
InterPro:Sig_transdc_resp-reg_receiverEnsemblPlantsGene:Solyc07g056580.2EnsemblPlants:Solyc07g056580.2.1TMHMM:TMhelixUniParc:UPI000049609ASEG:seg
Description
Ethylene receptor [Source:UniProtKB/TrEMBL;Acc:Q5QG25]
Coordinates
chr7:+:64389287..64395804
Molecular Weight (calculated)
81707.1 Da
IEP (calculated)
6.878
GRAVY (calculated)
0.165
Length
736 amino acids
Sequence
(BLAST)
001: MDCNCFDPLL PADELLMKYQ YISDFFIAVA YFSIPIELVY FVQKSAVFPY RWVLVQFGAF IVLCGATHLI NLWTSTPHTR TVAMVMTTAK FSTAAVSCAT
101: AVMLVHIIPD LLSVKTRELF LKNKAAELDR EMGLIRTQEE TGRYVRMLTH EIRSTLDRHT ILKTTLVELG RALQLEECAL WMPTRTGVEL QLSYTLHHQN
201: PVGFTVPIQL PVINQVFSAN CAVKISPNSA VARLRPTRKY IPGEVVAVRV PLLHLSNFQT NDWPELSPKS YALMVLMLPS NSARQWHVHE LELVDVVADQ
301: VAVALSHAAI LEESMRARDL LIEQNVALDL ARREAETAVR ARNDFLGVMN HEMRTPMHAV VALSSLLQES ELIPEQRLMV ETILKSSNLL ATLINDVLDL
401: SRLEDGSLQL DVGTFNLHAL FREVLNLIKP VAAVKKLFVT LSLSSDFPEV AIGDEKRLMQ ILLNVVGNAV KFSEEGSVSV SAVNAKSESL IDPRAPEFFP
501: VQSENHFYLR VQVKDTGSGI NPQDFPKLFC KFAQNQEPAT KNSAGTGLGL AICKRFVNLM EGHIWIESEG VGKGSTAIFI VKLGIPGRLN ESKLPFTAGL
601: PANHMQMTFQ GLKVLVMDDN GFSRMVTKSL LVHLGCDVTT IGSGDECLRI LTREHKVLIM DASITGMNCY DVAVSVHEKF GKRLERPLIV ALTGNTDQVT
701: KENCLRVGMD GVILKPVSID KMRSVLSGLL EHGTVL
Best Arabidopsis Sequence Match ( AT1G66340.1 )
(BLAST)
001: MEVCNCIEPQ WPADELLMKY QYISDFFIAI AYFSIPLELI YFVKKSAVFP YRWVLVQFGA FIVLCGATHL INLWTFTTHS RTVALVMTTA KVLTAVVSCA
101: TALMLVHIIP DLLSVKTREL FLKNKAAELD REMGLIRTQE ETGRHVRMLT HEIRSTLDRH TILKTTLVEL GRTLALEECA LWMPTRTGLE LQLSYTLRHQ
201: HPVEYTVPIQ LPVINQVFGT SRAVKISPNS PVARLRPVSG KYMLGEVVAV RVPLLHLSNF QINDWPELST KRYALMVLML PSDSARQWHV HELELVEVVA
301: DQVAVALSHA AILEESMRAR DLLMEQNVAL DLARREAETA IRARNDFLAV MNHEMRTPMH AIIALSSLLQ ETELTPEQRL MVETILKSSN LLATLMNDVL
401: DLSRLEDGSL QLELGTFNLH TLFREVLNLI KPIAVVKKLP ITLNLAPDLP EFVVGDEKRL MQIILNIVGN AVKFSKQGSI SVTALVTKSD TRAADFFVVP
501: TGSHFYLRVK VKDSGAGINP QDIPKIFTKF AQTQSLATRS SGGSGLGLAI SKRFVNLMEG NIWIESDGLG KGCTAIFDVK LGISERSNES KQSGIPKVPA
601: IPRHSNFTGL KVLVMDENGV SRMVTKGLLV HLGCEVTTVS SNEECLRVVS HEHKVVFMDV CMPGVENYQI ALRIHEKFTK QRHQRPLLVA LSGNTDKSTK
701: EKCMSFGLDG VLLKPVSLDN IRDVLSDLLE PRVLYEGM
Arabidopsis Description
ETR1Ethylene receptor 1 [Source:UniProtKB/Swiss-Prot;Acc:P49333]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.