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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 2
  • cytosol 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70289
CDX70318
CDX80113
CDX80884
CDX85268
CDX86370
CDX86641
CDY00096
CDY07498
CDY10360
CDY10393
CDY11267
CDY15498
CDY19286
CDY19992
CDY21123
CDY30004
CDY35503
CDY37282
CDY49629
CDY49633
CDY63851
CDY64702
CDY66567
CDY67999
CDY70443
CDY70681

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G66340.1 CDX86641 AT1G04310.1 18577522
AT1G66340.1 CDY15498 AT1G04310.1 18577522
AT1G66340.1 CDY67999 AT1G04310.1 18577522
AT1G66340.1 CDY70681 AT1G04310.1 18577522
AT1G66340.1 CDY07498 AT1G66340.1 18384742
AT1G66340.1 CDY49629 AT1G66340.1 18384742
AT1G66340.1 CDY49633 AT1G66340.1 18384742
AT1G66340.1 CDY66567 AT1G66340.1 18384742
AT1G66340.1 CDY07498 AT1G66340.1 18577522
AT1G66340.1 CDY49629 AT1G66340.1 18577522
AT1G66340.1 CDY49633 AT1G66340.1 18577522
AT1G66340.1 CDY66567 AT1G66340.1 18577522
AT1G66340.1 CDX80113 AT2G40940.1 18577522
AT1G66340.1 CDY63851 AT2G40940.1 18577522
AT1G66340.1 CDY21123 AT3G04580.1 18577522
AT1G66340.1 CDY30004 AT3G04580.1 18577522
AT1G66340.1 CDY64702 AT3G04580.1 18577522
AT1G66340.1 CDY19286 AT3G21510.1 10930573
AT1G66340.1 CDY37282 AT3G21510.1 10930573
AT1G66340.1 CDY19286 AT3G21510.1 18384742
AT1G66340.1 CDY37282 AT3G21510.1 18384742
AT1G66340.1 CDY35503 AT3G23150.1 18577522
AT1G66340.1 CDY70443 AT3G23150.1 18577522
AT1G66340.1 CDX85268 AT3G29350.1 10930573
AT1G66340.1 CDX86370 AT3G29350.1 10930573
AT1G66340.1 CDY00096 AT3G29350.1 10930573
AT1G66340.1 CDY19992 AT3G29350.1 10930573
AT1G66340.1 CDX70318 AT5G03280.1 19769567
AT1G66340.1 CDY10393 AT5G03280.1 19769567
AT1G66340.1 CDX70289 AT5G03730.1 12837948
AT1G66340.1 CDX80884 AT5G03730.1 12837948
AT1G66340.1 CDY10360 AT5G03730.1 12837948
AT1G66340.1 CDY11267 AT5G03730.1 12837948
AT1G66340.1 CDX70289 AT5G03730.1 8417317
AT1G66340.1 CDX80884 AT5G03730.1 8417317
AT1G66340.1 CDY10360 AT5G03730.1 8417317
AT1G66340.1 CDY11267 AT5G03730.1 8417317
AT1G66340.1 CDX70289 AT5G03730.1 9560288
AT1G66340.1 CDX80884 AT5G03730.1 9560288
AT1G66340.1 CDY10360 AT5G03730.1 9560288
AT1G66340.1 CDY11267 AT5G03730.1 9560288
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY66567 Canola cytosol 94.24 89.73
CDY64702 Canola mitochondrion 23.74 25.19
CDY49633 Canola cytosol 90.65 17.14
CDY07498 Canola cytosol 90.65 17.12
CDY21123 Canola cytosol 35.97 16.67
AT1G66340.1 Thale cress plasma membrane 85.61 16.12
CDY03106 Canola cytosol 7.19 13.89
CDY03102 Canola cytosol 7.19 13.89
KRH27542 Soybean cytosol 65.47 12.31
KRH36433 Soybean cytosol 64.03 12.03
VIT_19s0093g00580.t01 Wine grape cytosol 63.31 11.88
PGSC0003DMT400020285 Potato endoplasmic reticulum, plasma membrane, plastid 62.59 11.54
Solyc12g011330.2.1 Tomato endoplasmic reticulum, plasma membrane, plastid 61.87 11.41
PGSC0003DMT400071109 Potato cytosol, endoplasmic reticulum, plasma membrane 56.83 10.73
Solyc07g056580.2.1 Tomato cytosol, endoplasmic reticulum, plasma membrane 53.96 10.19
CDY30004 Canola plasma membrane 35.97 6.53
CDY35503 Canola plasma membrane 33.09 5.91
CDY70443 Canola plasma membrane 33.09 5.9
CDX97049 Canola nucleus 23.74 3.68
CDX69808 Canola nucleus 23.74 3.67
CDY67688 Canola nucleus 22.3 3.4
CDY40112 Canola nucleus 22.3 3.38
CDY03909 Canola endoplasmic reticulum, golgi, plasma membrane 22.3 3.1
CDY15717 Canola endoplasmic reticulum, golgi, plasma membrane 22.3 3.04
CDY17631 Canola cytosol, peroxisome, plasma membrane 22.3 2.95
CDY03101 Canola cytosol, peroxisome, plasma membrane 22.3 2.95
CDX74635 Canola cytosol, golgi, plasma membrane 22.3 2.7
CDY47297 Canola plasma membrane 22.3 2.7
CDX93074 Canola plasma membrane 20.86 2.64
CDY50037 Canola endoplasmic reticulum, golgi, plasma membrane 20.86 2.64
CDY20843 Canola nucleus 21.58 2.51
CDY24380 Canola nucleus 21.58 2.51
CDY55381 Canola endoplasmic reticulum, plasma membrane, plastid 20.14 2.45
CDY12735 Canola endoplasmic reticulum, golgi, plasma membrane 17.99 2.35
CDX80103 Canola endoplasmic reticulum, golgi, plasma membrane 18.7 2.34
CDX70367 Canola endoplasmic reticulum, golgi 22.3 2.26
CDY01193 Canola endoplasmic reticulum, golgi, plasma membrane 17.27 2.25
CDY15498 Canola plasma membrane 15.11 1.23
CDX80113 Canola plasma membrane 5.04 1.14
CDY63851 Canola plasma membrane 4.32 0.96
CDX78398 Canola cytosol 2.16 0.48
CDX90318 Canola cytosol 0.72 0.32
CDY70681 Canola endoplasmic reticulum 1.44 0.32
CDY67999 Canola plasma membrane 1.44 0.32
CDX86641 Canola endoplasmic reticulum 0.72 0.17
CDX78397 Canola cytosol 0.0 0.0
Protein Annotations
Gene3D:3.40.50.2300MapMan:50.2.7GO:A0A078IJQ9UniProt:A0A078IJQ9EnsemblPlants:CDY49629ProteinID:CDY49629
ProteinID:CDY49629.1InterPro:CheY-like_superfamilyGO:GO:0000160GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00093492001InterPro:IPR001789
PFAM:PF00072PFscan:PS50110PANTHER:PTHR24423PANTHER:PTHR24423:SF598SMART:SM00448SUPFAM:SSF52172
InterPro:Sig_transdc_resp-reg_receiverUniParc:UPI0004EEF33D::::
Description
BnaCnng17810DBnaCnng17810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJQ9]
Coordinates
chrLK032849:-:13565..14109
Molecular Weight (calculated)
15828.5 Da
IEP (calculated)
8.945
GRAVY (calculated)
-0.098
Length
139 amino acids
Sequence
(BLAST)
001: MYNPNFSIQY SLKARFMDEN GVSRMVTKGL LVHLGCEVTT VSSSEECLRV VSHKHRVVFM DVCTPGVENY QIALRIHEKF TKRHQRPLLV ALTGNTDKST
101: KEKCMSFGLV GVLLKPVSLD NMRNVLSDLL EHRVLYEAM
Best Arabidopsis Sequence Match ( AT1G66340.1 )
(BLAST)
001: MEVCNCIEPQ WPADELLMKY QYISDFFIAI AYFSIPLELI YFVKKSAVFP YRWVLVQFGA FIVLCGATHL INLWTFTTHS RTVALVMTTA KVLTAVVSCA
101: TALMLVHIIP DLLSVKTREL FLKNKAAELD REMGLIRTQE ETGRHVRMLT HEIRSTLDRH TILKTTLVEL GRTLALEECA LWMPTRTGLE LQLSYTLRHQ
201: HPVEYTVPIQ LPVINQVFGT SRAVKISPNS PVARLRPVSG KYMLGEVVAV RVPLLHLSNF QINDWPELST KRYALMVLML PSDSARQWHV HELELVEVVA
301: DQVAVALSHA AILEESMRAR DLLMEQNVAL DLARREAETA IRARNDFLAV MNHEMRTPMH AIIALSSLLQ ETELTPEQRL MVETILKSSN LLATLMNDVL
401: DLSRLEDGSL QLELGTFNLH TLFREVLNLI KPIAVVKKLP ITLNLAPDLP EFVVGDEKRL MQIILNIVGN AVKFSKQGSI SVTALVTKSD TRAADFFVVP
501: TGSHFYLRVK VKDSGAGINP QDIPKIFTKF AQTQSLATRS SGGSGLGLAI SKRFVNLMEG NIWIESDGLG KGCTAIFDVK LGISERSNES KQSGIPKVPA
601: IPRHSNFTGL KVLVMDENGV SRMVTKGLLV HLGCEVTTVS SNEECLRVVS HEHKVVFMDV CMPGVENYQI ALRIHEKFTK QRHQRPLLVA LSGNTDKSTK
701: EKCMSFGLDG VLLKPVSLDN IRDVLSDLLE PRVLYEGM
Arabidopsis Description
ETR1Ethylene receptor 1 [Source:UniProtKB/Swiss-Prot;Acc:P49333]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.