Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- golgi 5
- plasma membrane 7
- endoplasmic reticulum 6
- vacuole 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86641 | Canola | endoplasmic reticulum | 33.74 | 96.97 |
| Bra030564.1-P | Field mustard | plasma membrane | 94.15 | 95.66 |
| CDY67999 | Canola | plasma membrane | 30.23 | 83.52 |
| CDY70681 | Canola | endoplasmic reticulum | 29.82 | 82.66 |
| AT1G04310.1 | Thale cress | endoplasmic reticulum | 29.65 | 78.6 |
| KRG90373 | Soybean | plasma membrane | 16.2 | 60.61 |
| KRH34517 | Soybean | plasma membrane | 21.58 | 50.07 |
| KRG92290 | Soybean | plasma membrane | 22.05 | 49.48 |
| VIT_05s0049g00090.t01 | Wine grape | plasma membrane | 21.81 | 48.82 |
| CDY70443 | Canola | plasma membrane | 21.58 | 47.31 |
| CDY35503 | Canola | plasma membrane | 21.46 | 47.11 |
| PGSC0003DMT400041983 | Potato | plasma membrane | 19.77 | 44.42 |
| Solyc06g053710.2.1 | Tomato | plasma membrane | 19.65 | 44.15 |
| HORVU6Hr1G080170.1 | Barley | plasma membrane | 4.74 | 43.09 |
| CDY30004 | Canola | plasma membrane | 18.77 | 41.91 |
| GSMUA_Achr11P... | Banana | plasma membrane | 18.36 | 41.42 |
| Zm00001d051889_P002 | Maize | endoplasmic reticulum | 17.89 | 40.58 |
| GSMUA_Achr8P14350_001 | Banana | endoplasmic reticulum | 17.89 | 40.42 |
| TraesCS6B01G439600.1 | Wheat | mitochondrion | 18.42 | 40.18 |
| TraesCS6D01G383600.1 | Wheat | mitochondrion | 18.3 | 39.92 |
| OQU85974 | Sorghum | plasma membrane | 18.01 | 39.69 |
| TraesCS6A01G399400.2 | Wheat | mitochondrion, plasma membrane | 18.42 | 38.94 |
| TraesCS2D01G000500.1 | Wheat | plasma membrane | 17.6 | 38.79 |
| Os04t0169100-02 | Rice | plasma membrane | 17.25 | 38.66 |
| TraesCS2B01G023800.1 | Wheat | plasma membrane | 17.37 | 38.62 |
| TraesCS2A01G000200.1 | Wheat | plasma membrane | 17.49 | 38.43 |
| EES10426 | Sorghum | plasma membrane | 17.37 | 38.42 |
| HORVU0Hr1G001750.2 | Barley | endoplasmic reticulum | 17.37 | 38.22 |
| HORVU6Hr1G091700.6 | Barley | cytosol, mitochondrion, plasma membrane | 18.3 | 38.08 |
| Zm00001d004372_P003 | Maize | plasma membrane | 17.08 | 37.92 |
| PGSC0003DMT400044244 | Potato | plasma membrane | 16.67 | 37.85 |
| HORVU2Hr1G000030.1 | Barley | plasma membrane | 17.13 | 37.81 |
| Solyc09g089610.2.1 | Tomato | endoplasmic reticulum | 16.61 | 37.67 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, plasma membrane | 14.33 | 37.58 |
| Zm00001d025050_P001 | Maize | cytosol, golgi, plasma membrane | 17.08 | 36.32 |
| Os02t0820900-03 | Rice | mitochondrion | 17.72 | 36.24 |
| TraesCS6D01G266200.1 | Wheat | plasma membrane | 14.5 | 34.16 |
| TraesCS6A01G285800.1 | Wheat | plasma membrane | 14.39 | 33.79 |
| TraesCS6A01G329400.1 | Wheat | plasma membrane | 14.33 | 33.56 |
| TraesCS6B01G314600.1 | Wheat | plasma membrane | 14.21 | 33.33 |
| TraesCS6D01G308300.1 | Wheat | plasma membrane | 14.15 | 33.24 |
| TraesCS6B01G360200.1 | Wheat | cytosol, endoplasmic reticulum, golgi | 14.15 | 33.24 |
| HORVU6Hr1G071860.2 | Barley | plasma membrane | 13.98 | 33.1 |
| CDY64702 | Canola | mitochondrion | 2.46 | 32.06 |
| CDX80113 | Canola | plasma membrane | 11.23 | 31.32 |
| Os07t0259100-01 | Rice | mitochondrion, plasma membrane | 14.21 | 31.27 |
| HORVU6Hr1G080180.1 | Barley | cytosol | 9.06 | 30.82 |
| CDY63851 | Canola | plasma membrane | 11.05 | 30.34 |
| CDY49633 | Canola | cytosol | 12.92 | 30.07 |
| CDY07498 | Canola | cytosol | 12.92 | 30.03 |
| Zm00001d021687_P001 | Maize | plasma membrane | 13.86 | 27.72 |
| EES06508 | Sorghum | mitochondrion, plasma membrane | 13.39 | 27.69 |
| KRG90374 | Soybean | cytosol | 3.63 | 27.68 |
| CDY21123 | Canola | cytosol | 4.85 | 27.67 |
| KXG36402 | Sorghum | plasma membrane | 13.74 | 27.49 |
| Zm00001d053594_P001 | Maize | plasma membrane | 12.81 | 27.27 |
| CDY03102 | Canola | cytosol | 0.82 | 19.44 |
| CDY03106 | Canola | cytosol | 0.82 | 19.44 |
| CDY49629 | Canola | cytosol | 1.23 | 15.11 |
| CDY66567 | Canola | cytosol | 1.29 | 15.07 |
| CDX90318 | Canola | cytosol | 2.46 | 13.64 |
| CDX97049 | Canola | nucleus | 6.43 | 12.28 |
| CDX69808 | Canola | nucleus | 6.43 | 12.25 |
| CDY67688 | Canola | nucleus | 6.32 | 11.86 |
| CDY40112 | Canola | nucleus | 6.32 | 11.79 |
| CDX78398 | Canola | cytosol | 4.33 | 11.78 |
| CDY03101 | Canola | cytosol, peroxisome, plasma membrane | 7.19 | 11.69 |
| CDY17631 | Canola | cytosol, peroxisome, plasma membrane | 7.19 | 11.69 |
| CDY15717 | Canola | endoplasmic reticulum, golgi, plasma membrane | 6.73 | 11.26 |
| CDX78397 | Canola | cytosol | 2.51 | 11.17 |
| CDY47297 | Canola | plasma membrane | 7.49 | 11.14 |
| CDY03909 | Canola | endoplasmic reticulum, golgi, plasma membrane | 6.49 | 11.09 |
| CDX93074 | Canola | plasma membrane | 7.08 | 11.03 |
| CDY50037 | Canola | endoplasmic reticulum, golgi, plasma membrane | 7.08 | 11.01 |
| CDX74635 | Canola | cytosol, golgi, plasma membrane | 7.37 | 10.97 |
| CDX70367 | Canola | endoplasmic reticulum, golgi | 6.26 | 7.8 |
| CDY20843 | Canola | nucleus | 5.32 | 7.63 |
| CDY24380 | Canola | nucleus | 5.32 | 7.62 |
| CDY01193 | Canola | endoplasmic reticulum, golgi, plasma membrane | 4.56 | 7.3 |
| CDY12735 | Canola | endoplasmic reticulum, golgi, plasma membrane | 4.5 | 7.23 |
| CDX80103 | Canola | endoplasmic reticulum, golgi, plasma membrane | 4.27 | 6.56 |
| CDY55381 | Canola | endoplasmic reticulum, plasma membrane, plastid | 4.33 | 6.48 |
Protein Annotations
| Gene3D:1.10.287.130 | MapMan:11.5.2.1 | Gene3D:2.60.210.10 | MapMan:22.5.1.6 | Gene3D:3.30.450.40 | GO:A0A078FT78 |
| UniProt:A0A078FT78 | EnsemblPlants:CDY15498 | ProteinID:CDY15498 | ProteinID:CDY15498.1 | ncoils:Coil | InterPro:GAF |
| InterPro:GAF-like_dom_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00089668001 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:IPR029016 | InterPro:MATH/TRAF_dom |
| PFAM:PF00917 | PFAM:PF01590 | PFscan:PS50144 | PANTHER:PTHR45001 | SMART:SM00061 | SMART:SM00065 |
| SUPFAM:SSF49599 | SUPFAM:SSF55781 | SignalP:SignalP-noTM | TMHMM:TMhelix | InterPro:TRAF-like | UniParc:UPI0004EE954D |
| SEG:seg | : | : | : | : | : |
Description
BnaA08g27820DBnaA08g27820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FT78]
Coordinates
chrLK032055:-:251126..260078
Molecular Weight (calculated)
189804.0 Da
IEP (calculated)
7.378
GRAVY (calculated)
-0.437
Length
1710 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLKTLLVHGP LLFFFFFLIS SVVAGDENDG GLSICNCDDE DSYFSYEGIL ESQKVGDFLI AVAYFSIPIE LLYFVSRTNV SSPYIWVVCE FIAFIVLCGM
0101: SHLLSGFTYG PHYPWVMTAA TVFKMLTAIV SFLTAISLVT LLPLLLKAKV REFMLSKKTR ELNREVGLIM KQTETSLHVR MLTTKIRTSL DRHTILYTTL
0201: VELSKTLGLK NCAVWIPNEI KTEMNLTHEL NGENVGRGPG GGPSGGPGGF SIPITESDVV RIKRSVEVNM LSAGSALASV TTRGKTGQTV GIRVPMLRVC
0301: NFKGGTPEAI HMCYAILVCV LPLRRSWSYQ ELEIVKVVAD QVAVAISHAV ILEESQLMRE KLAEQNRALQ VARENAMRAN QAKAAFEEMM GDAMRRPVRS
0401: ILELLPLITQ DGVSLPETQK VIVDAMGRTS ELLLHLVNNA GDVASGTHCF SLRSVVKETA CLARCLCLGN GFGFTTDVDR ALPDCVVGDA RKVLQAVLHM
0501: LGGVMNRKVK GNVTFKVVPE RGSSEVVKES QEAAWRQCYS KEYVEVKFGF DVAAEGEESS SSSSSSTKFM QGNVLVVEDG PGLVKSLSVV FRFQLRRSIV
0601: SRGGGYSGET FKTSTPPSTS NGHWRHLKKN LYWGMTETVN EDSGVGRSVE ASSNGHHSLS GESLSLSKWR SSAQVENGTP STSLSYWDTD DDEDHGLKPS
0701: QLFGKHKWKI EKFSEIKKRE LRSNYFEAGG YKWYILIYPQ GCDVCNHLSL FLCVANHDKH LPGWSHFAQF TIAVVNKDPK KSKFSDTLHR FWKKEHDWGW
0801: KKFMESTKLQ DGFIDDSDSL TIEAQVQVIR ERVDRPFRCL HCGYRRELAR VYLSNVEQNC RRFVEEKRSK LGRLIEDKAR WTSFGVFWLG MDQNSRHRMS
0901: REKMDVILKG IVKHFFIEKE VTSTLVMDSL YSGLKALEGQ SKSKKARARS LDAKEWPAPI VSVDKDMFVL VDDVLLLLER AALEPLPPKE NKAPQNRTKD
1001: GNDGEEVSNE AVERDERHLT ELGRRAVEIF VLTHIFKVHN YVSIILLFSS LLSKIEVAYK EAIALKRQED LIREEEEEWL AETEQRAKRG AAEREKKSKK
1101: KQAKQKRNKN KGKDKKKEEK VTLATHEKDL EENHHDEEEN DSVTEKAQPS AEKTDTLEEV SDISDSVDGS ADILHPDLED GDSSSVHWDA DALEIHPPPS
1201: EGSSISISTP NGIAERKTQS TMDDSSSTCS NDSIRSGVTN GSYKGNMLNF RNQKSPNQGK NQQVKITSDT RSLVTEPDDD QPKSQNSSSE SDWVVVSHIQ
1301: ESESSRNRRP VGKQRNVAQV IVNSVDIHRR EEKSAAVVSS PRTAAKNPSP LTQTQTKPEK RSGSNAEAVP NKKVMSATVP PSSSQVSPPS SVSQSQAVGL
1401: KADMQKIPSL KQPATTTIVT RPSSAPIIPA MRPAPVIVSS SVQPTTALPR SVSSAGRLGP DSSLRNHQTY TPQSYKHAIV GNTPGSSSSF NHHPSSHGVA
1501: PTTLPSASYT QTPAFQSSSF PFNQDGSFRS RSFNSVNMGM NNRYTPAVTS NSSLNHIDTE TARQQAQSLM TDEFPHLDII NDLLEDENCG NIVFNGSIYN
1601: SQPQLFNNQY SYLGGAADLG ISGELLSSGR SRSFGDEGFH YMPRGPYAEG LIPTQWQMAN MDLSLLAMRN SNVEDTASYH HTYNFGLDST NQSFSSGING
1701: YTEFRPSNGH
0101: SHLLSGFTYG PHYPWVMTAA TVFKMLTAIV SFLTAISLVT LLPLLLKAKV REFMLSKKTR ELNREVGLIM KQTETSLHVR MLTTKIRTSL DRHTILYTTL
0201: VELSKTLGLK NCAVWIPNEI KTEMNLTHEL NGENVGRGPG GGPSGGPGGF SIPITESDVV RIKRSVEVNM LSAGSALASV TTRGKTGQTV GIRVPMLRVC
0301: NFKGGTPEAI HMCYAILVCV LPLRRSWSYQ ELEIVKVVAD QVAVAISHAV ILEESQLMRE KLAEQNRALQ VARENAMRAN QAKAAFEEMM GDAMRRPVRS
0401: ILELLPLITQ DGVSLPETQK VIVDAMGRTS ELLLHLVNNA GDVASGTHCF SLRSVVKETA CLARCLCLGN GFGFTTDVDR ALPDCVVGDA RKVLQAVLHM
0501: LGGVMNRKVK GNVTFKVVPE RGSSEVVKES QEAAWRQCYS KEYVEVKFGF DVAAEGEESS SSSSSSTKFM QGNVLVVEDG PGLVKSLSVV FRFQLRRSIV
0601: SRGGGYSGET FKTSTPPSTS NGHWRHLKKN LYWGMTETVN EDSGVGRSVE ASSNGHHSLS GESLSLSKWR SSAQVENGTP STSLSYWDTD DDEDHGLKPS
0701: QLFGKHKWKI EKFSEIKKRE LRSNYFEAGG YKWYILIYPQ GCDVCNHLSL FLCVANHDKH LPGWSHFAQF TIAVVNKDPK KSKFSDTLHR FWKKEHDWGW
0801: KKFMESTKLQ DGFIDDSDSL TIEAQVQVIR ERVDRPFRCL HCGYRRELAR VYLSNVEQNC RRFVEEKRSK LGRLIEDKAR WTSFGVFWLG MDQNSRHRMS
0901: REKMDVILKG IVKHFFIEKE VTSTLVMDSL YSGLKALEGQ SKSKKARARS LDAKEWPAPI VSVDKDMFVL VDDVLLLLER AALEPLPPKE NKAPQNRTKD
1001: GNDGEEVSNE AVERDERHLT ELGRRAVEIF VLTHIFKVHN YVSIILLFSS LLSKIEVAYK EAIALKRQED LIREEEEEWL AETEQRAKRG AAEREKKSKK
1101: KQAKQKRNKN KGKDKKKEEK VTLATHEKDL EENHHDEEEN DSVTEKAQPS AEKTDTLEEV SDISDSVDGS ADILHPDLED GDSSSVHWDA DALEIHPPPS
1201: EGSSISISTP NGIAERKTQS TMDDSSSTCS NDSIRSGVTN GSYKGNMLNF RNQKSPNQGK NQQVKITSDT RSLVTEPDDD QPKSQNSSSE SDWVVVSHIQ
1301: ESESSRNRRP VGKQRNVAQV IVNSVDIHRR EEKSAAVVSS PRTAAKNPSP LTQTQTKPEK RSGSNAEAVP NKKVMSATVP PSSSQVSPPS SVSQSQAVGL
1401: KADMQKIPSL KQPATTTIVT RPSSAPIIPA MRPAPVIVSS SVQPTTALPR SVSSAGRLGP DSSLRNHQTY TPQSYKHAIV GNTPGSSSSF NHHPSSHGVA
1501: PTTLPSASYT QTPAFQSSSF PFNQDGSFRS RSFNSVNMGM NNRYTPAVTS NSSLNHIDTE TARQQAQSLM TDEFPHLDII NDLLEDENCG NIVFNGSIYN
1601: SQPQLFNNQY SYLGGAADLG ISGELLSSGR SRSFGDEGFH YMPRGPYAEG LIPTQWQMAN MDLSLLAMRN SNVEDTASYH HTYNFGLDST NQSFSSGING
1701: YTEFRPSNGH
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.