Factsheet for TraesCS6B01G360200.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, cytosol

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, golgi
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G000200.1
TraesCS2B01G023800.1
TraesCS2D01G000500.1
TraesCS4A01G302000.1
TraesCS4B01G012100.1
TraesCS4D01G010200.1
TraesCS6A01G285800.1
TraesCS6A01G329400.1
TraesCS6A01G399400.2
TraesCS6B01G314600.1
TraesCS6B01G360200.1
TraesCS6B01G439600.1
TraesCS6D01G266200.1
TraesCS6D01G308300.1
TraesCS6D01G383600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04310.1	TraesCS2A01G000200.1	AT1G04310.1	18577522
AT1G04310.1	TraesCS2B01G023800.1	AT1G04310.1	18577522
AT1G04310.1	TraesCS2D01G000500.1	AT1G04310.1	18577522
AT1G04310.1	TraesCS6A01G285800.1	AT1G04310.1	18577522
AT1G04310.1	TraesCS6A01G329400.1	AT1G04310.1	18577522
AT1G04310.1	TraesCS6A01G399400.2	AT1G04310.1	18577522
AT1G04310.1	TraesCS6B01G314600.1	AT1G04310.1	18577522
AT1G04310.1	TraesCS6B01G360200.1	AT1G04310.1	18577522
AT1G04310.1	TraesCS6B01G439600.1	AT1G04310.1	18577522
AT1G04310.1	TraesCS6D01G266200.1	AT1G04310.1	18577522
AT1G04310.1	TraesCS6D01G308300.1	AT1G04310.1	18577522
AT1G04310.1	TraesCS6D01G383600.1	AT1G04310.1	18577522
AT3G23150.1	TraesCS4A01G302000.1	AT5G03730.1	12177468
AT3G23150.1	TraesCS4B01G012100.1	AT5G03730.1	12177468
AT3G23150.1	TraesCS4D01G010200.1	AT5G03730.1	12177468

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G329400.1	Wheat	plasma membrane	96.02	95.75
TraesCS6D01G308300.1	Wheat	plasma membrane	95.6	95.6
HORVU6Hr1G080170.1	Barley	plasma membrane	24.45	94.68
HORVU6Hr1G080180.1	Barley	cytosol	63.19	91.45
TraesCS6B01G314600.1	Wheat	plasma membrane	66.9	66.8
Os07t0259100-01	Rice	mitochondrion, plasma membrane	60.03	56.24
TraesCS2B01G023800.1	Wheat	plasma membrane	50.69	47.98
Zm00001d053594_P001	Maize	plasma membrane	52.2	47.32
EES06508	Sorghum	mitochondrion, plasma membrane	51.65	45.47
GSMUA_Achr11P...	Banana	plasma membrane	46.57	44.72
GSMUA_Achr8P14350_001	Banana	endoplasmic reticulum	46.43	44.65
Solyc06g051610.1.1	Tomato	cytosol	10.16	44.58
Solyc06g036450.1.1	Tomato	cytosol	5.91	43.0
KXG36402	Sorghum	plasma membrane	49.86	42.46
VIT_14s0081g00630.t01	Wine grape	plasma membrane	43.41	41.58
VIT_05s0049g00090.t01	Wine grape	plasma membrane	43.54	41.49
Zm00001d021687_P001	Maize	plasma membrane	47.53	40.47
Solyc12g044870.1.1	Tomato	cytosol	9.2	40.36
Solyc11g065590.1.1	Tomato	cytosol	4.95	40.0
Solyc06g053710.2.1	Tomato	plasma membrane	41.07	39.29
PGSC0003DMT400041983	Potato	plasma membrane	41.07	39.29
Solyc11g006180.1.1	Tomato	plasma membrane	41.35	39.24
PGSC0003DMT400073847	Potato	plasma membrane	41.35	39.24
TraesCS6B01G439600.1	Wheat	mitochondrion	42.17	39.16
Solyc05g055070.2.1	Tomato	plasma membrane	39.7	38.79
Solyc09g082910.1.1	Tomato	cytosol	8.79	38.55
Bra040134.1-P	Field mustard	plasma membrane	40.52	38.51
CDY30004	Canola	plasma membrane	40.52	38.51
PGSC0003DMT400060160	Potato	endoplasmic reticulum	40.25	38.4
AT3G04580.1	Thale cress	plasma membrane	40.25	38.25
Solyc04g049990.1.1	Tomato	cytosol	6.87	38.17
Solyc01g014770.1.1	Tomato	cytosol	6.87	37.31
Solyc04g049320.1.1	Tomato	cytosol, plastid, vacuole	5.63	37.27
KRH31729	Soybean	endoplasmic reticulum	12.09	36.82
Bra023756.1-P	Field mustard	plasma membrane	39.42	36.79
CDY70443	Canola	plasma membrane	39.42	36.79
CDY35503	Canola	plasma membrane	39.29	36.71
TraesCS5B01G527300.1	Wheat	cytosol, golgi, plasma membrane	18.82	36.53
AT3G23150.1	Thale cress	endoplasmic reticulum, plasma membrane	38.74	36.48
Solyc09g089610.2.1	Tomato	endoplasmic reticulum	37.5	36.21
CDY64702	Canola	mitochondrion	6.46	35.88
PGSC0003DMT400044244	Potato	plasma membrane	37.09	35.86
CDX86641	Canola	endoplasmic reticulum	28.43	34.79
Bra015303.1-P	Field mustard	endoplasmic reticulum	29.26	34.58
CDY70681	Canola	endoplasmic reticulum	29.26	34.52
CDY67999	Canola	plasma membrane	29.26	34.41
AT1G04310.1	Thale cress	endoplasmic reticulum	29.95	33.8
Solyc08g068360.1.1	Tomato	cytosol	5.22	31.67
TraesCS5B01G001600.1	Wheat	plasma membrane	27.34	31.59
Solyc09g065310.1.1	Tomato	cytosol	2.75	31.25
Solyc12g038690.1.1	Tomato	cytosol	2.75	31.25
Solyc09g011680.1.1	Tomato	cytosol	4.4	30.77
TraesCS4B01G039300.1	Wheat	cytosol, golgi, plasma membrane	26.79	30.71
Solyc04g064840.1.1	Tomato	endoplasmic reticulum	7.55	30.39
CDY21123	Canola	cytosol	12.36	30.0
Solyc04g025660.1.1	Tomato	cytosol	4.26	29.81
TraesCS1B01G127000.1	Wheat	cytosol, golgi, plasma membrane	25.55	29.15
Solyc12g027610.1.1	Tomato	cytosol	7.69	28.72
Solyc12g062760.1.1	Tomato	cytosol	3.43	28.41
Bra030564.1-P	Field mustard	plasma membrane	32.97	14.26
CDY15498	Canola	plasma membrane	33.24	14.15
TraesCS4B01G050200.1	Wheat	cytosol	16.62	12.0
TraesCS6B01G342700.1	Wheat	mitochondrion	15.93	11.96
TraesCS3B01G469000.1	Wheat	cytosol, golgi, mitochondrion, peroxisome	15.11	10.9
TraesCS7B01G405100.1	Wheat	nucleus	11.26	8.46
TraesCS5B01G533800.1	Wheat	endoplasmic reticulum, golgi	8.38	8.31
TraesCS2B01G495500.1	Wheat	nucleus	6.87	8.24
TraesCS7B01G049400.1	Wheat	plasma membrane	11.13	7.75
TraesCS7B01G049100.1	Wheat	plasma membrane	10.99	7.25

Protein Annotations

MapMan:11.5.2.1	Gene3D:3.30.450.40	Gene3D:3.40.50.2300	InterPro:CheY-like_superfamily	InterPro:ETR	InterPro:GAF
InterPro:GAF-like_dom_sf	GO:GO:0000155	GO:GO:0000160	GO:GO:0003674	GO:GO:0003824	GO:GO:0004673
GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009987	GO:GO:0010105	GO:GO:0016020
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0038023	GO:GO:0038199	GO:GO:0050896
GO:GO:0051740	InterPro:IPR001789	InterPro:IPR029016	PFAM:PF00072	PFAM:PF01590	PIRSF:PIRSF026389
PFscan:PS50110	PANTHER:PTHR43719	PANTHER:PTHR43719:SF20	SMART:SM00065	SMART:SM00448	SUPFAM:SSF52172
SUPFAM:SSF55781	InterPro:Sig_transdc_resp-reg_receiver	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6B01G360200	EnsemblPlants:TraesCS6B01G360200.1	SEG:seg

Description

No Description!

Coordinates

chr6B:-:632179569..632182324

Molecular Weight (calculated)

78241.4 Da

IEP (calculated)

7.900

GRAVY (calculated)

0.183

Length

728 amino acids

Sequence
(BLAST)

001: MARHFASAGA GAVQRYYCGG ACDGGDDGAV QAMLQCQRVS DFLIAASYLS IPLELLYFAS CAGPAPLKWL LLQLAAFAVL GGATHLLAVF SLAHPHSSGL
101: LLASTAAKLL AALVSFATAV SLVALIPRLI RAKLREAFLR AKARQLDRDL GLIRRRVEAT SRVVRMLTHR IRSSPLDAHS VLHTTMLHLA DALELHSCAV
201: WMPGQDAGAD LHLVHQLSLR GKGPVRVVLG SQAPISPDDP DVVDVMASEA AKVLRPGSEL ATASSGELQP PGAVAAIRIP MLKVSNFDGG KTPVASSYAI
301: LVLALRSKAS GSGYREWSGH DMEVVQVIAD QVAVALSHAA VLEEWQAMSN RLAEQNRALL HAKQDAMMAT EGINSIQSAM CEGMRRPMYS IIGLLSMVRQ
401: AKDMRPEQRL VADAIARTST LSLALMNDVD TETLTVNRMP FDLHSLMREA MSVAGCLASC GGAGFSYQLE NGLPEWVVGD ETRVFHLLLQ MAGDVLGQRR
501: DGAGRLSFSI KSCNADQKNC IPVWPNLSAG CSICVEFQVA MERSTGCSQP PSSPASSQIN MCKKIVQMMN GTMWSASDGE SITLILHFQL QQSHVCRRTS
601: SSIPHFNGLR ILLADGDDMS RAVTQKLLEE LGCQVISVSS GTHCLALLGS AGSSFQLLLL DLDMDAFEVA LQIRGLKNRR WLLIVAALAV TVDDNIREMC
701: RHSGINGLIQ KPLTLTALGG QLHRVLRN

Best Arabidopsis Sequence Match ( AT1G66340.1 )
(BLAST)

001: MEVCNCIEPQ WPADELLMKY QYISDFFIAI AYFSIPLELI YFVKKSAVFP YRWVLVQFGA FIVLCGATHL INLWTFTTHS RTVALVMTTA KVLTAVVSCA
101: TALMLVHIIP DLLSVKTREL FLKNKAAELD REMGLIRTQE ETGRHVRMLT HEIRSTLDRH TILKTTLVEL GRTLALEECA LWMPTRTGLE LQLSYTLRHQ
201: HPVEYTVPIQ LPVINQVFGT SRAVKISPNS PVARLRPVSG KYMLGEVVAV RVPLLHLSNF QINDWPELST KRYALMVLML PSDSARQWHV HELELVEVVA
301: DQVAVALSHA AILEESMRAR DLLMEQNVAL DLARREAETA IRARNDFLAV MNHEMRTPMH AIIALSSLLQ ETELTPEQRL MVETILKSSN LLATLMNDVL
401: DLSRLEDGSL QLELGTFNLH TLFREVLNLI KPIAVVKKLP ITLNLAPDLP EFVVGDEKRL MQIILNIVGN AVKFSKQGSI SVTALVTKSD TRAADFFVVP
501: TGSHFYLRVK VKDSGAGINP QDIPKIFTKF AQTQSLATRS SGGSGLGLAI SKRFVNLMEG NIWIESDGLG KGCTAIFDVK LGISERSNES KQSGIPKVPA
601: IPRHSNFTGL KVLVMDENGV SRMVTKGLLV HLGCEVTTVS SNEECLRVVS HEHKVVFMDV CMPGVENYQI ALRIHEKFTK QRHQRPLLVA LSGNTDKSTK
701: EKCMSFGLDG VLLKPVSLDN IRDVLSDLLE PRVLYEGM

Arabidopsis Description

ETR1Ethylene receptor 1 [Source:UniProtKB/Swiss-Prot;Acc:P49333]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.