Factsheet for PGSC0003DMT400060160

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 5
plasma membrane 6
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400020285
PGSC0003DMT400071109

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04580.1	PGSC0003DMT400020285	AT1G66340.1	18577522
AT3G04580.1	PGSC0003DMT400071109	AT1G66340.1	18577522

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g055070.2.1	Tomato	plasma membrane	94.63	96.91
PGSC0003DMT400073847	Potato	plasma membrane	80.6	80.18
VIT_14s0081g00630.t01	Wine grape	plasma membrane	68.02	68.29
KRH34165	Soybean	plasma membrane	62.12	61.8
KRG92613	Soybean	plasma membrane	61.99	61.75
KRH68803	Soybean	plasma membrane	62.12	61.72
KRG97057	Soybean	plasma membrane	58.98	61.56
Bra040134.1-P	Field mustard	plasma membrane	60.03	59.79
CDY30004	Canola	plasma membrane	60.03	59.79
AT3G04580.1	Thale cress	plasma membrane	59.5	59.27
KRG98373	Soybean	extracellular	13.37	58.29
PGSC0003DMT400041983	Potato	plasma membrane	57.54	57.69
GSMUA_Achr11P...	Banana	plasma membrane	55.7	56.07
GSMUA_Achr8P14350_001	Banana	endoplasmic reticulum	54.52	54.95
CDY64702	Canola	mitochondrion	9.31	54.2
Os04t0169100-02	Rice	plasma membrane	51.38	51.38
TraesCS2D01G000500.1	Wheat	plasma membrane	52.03	51.16
TraesCS2B01G023800.1	Wheat	plasma membrane	51.51	51.11
TraesCS2A01G000200.1	Wheat	plasma membrane	51.9	50.9
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, plasma membrane	43.12	50.46
HORVU0Hr1G001750.2	Barley	endoplasmic reticulum	51.11	50.19
EES10426	Sorghum	plasma membrane	50.59	49.94
HORVU2Hr1G000030.1	Barley	plasma membrane	50.59	49.81
CDY21123	Canola	cytosol	19.4	49.33
Zm00001d004372_P003	Maize	plasma membrane	49.28	48.83
PGSC0003DMT400044244	Potato	plasma membrane	47.97	48.61
OQU85974	Sorghum	plasma membrane	49.02	48.2
TraesCS6D01G383600.1	Wheat	mitochondrion	49.41	48.09
TraesCS6B01G439600.1	Wheat	mitochondrion	49.41	48.09
Zm00001d025050_P001	Maize	cytosol, golgi, plasma membrane	49.67	47.14
Zm00001d051889_P002	Maize	endoplasmic reticulum	46.53	47.08
TraesCS6A01G399400.2	Wheat	mitochondrion, plasma membrane	49.41	46.6
HORVU6Hr1G091700.6	Barley	cytosol, mitochondrion, plasma membrane	49.41	45.86
HORVU6Hr1G080170.1	Barley	plasma membrane	11.14	45.21
Os02t0820900-03	Rice	mitochondrion	47.97	43.78
TraesCS6B01G360200.1	Wheat	cytosol, endoplasmic reticulum, golgi	38.4	40.25
TraesCS6D01G308300.1	Wheat	plasma membrane	37.88	39.7
TraesCS6A01G329400.1	Wheat	plasma membrane	37.88	39.59
TraesCS6D01G266200.1	Wheat	plasma membrane	37.61	39.53
TraesCS6B01G314600.1	Wheat	plasma membrane	37.61	39.37
TraesCS6A01G285800.1	Wheat	plasma membrane	37.48	39.29
HORVU6Hr1G071860.2	Barley	plasma membrane	36.3	38.37
HORVU6Hr1G080180.1	Barley	cytosol	25.03	37.97
Os07t0259100-01	Rice	mitochondrion, plasma membrane	38.01	37.32
PGSC0003DMT400071109	Potato	cytosol, endoplasmic reticulum, plasma membrane	34.86	36.14
PGSC0003DMT400020285	Potato	endoplasmic reticulum, plasma membrane, plastid	35.39	35.81
Zm00001d053594_P001	Maize	plasma membrane	37.22	35.37
EES06508	Sorghum	mitochondrion, plasma membrane	37.61	34.7
PGSC0003DMT400081399	Potato	cytosol, plasma membrane, vacuole	28.31	34.02
KXG36402	Sorghum	plasma membrane	35.91	32.05
Zm00001d021687_P001	Maize	plasma membrane	34.99	31.23
PGSC0003DMT400084727	Potato	cytosol, golgi, plasma membrane	11.01	15.61
PGSC0003DMT400075775	Potato	endoplasmic reticulum, golgi, plasma membrane	17.69	13.61
PGSC0003DMT400015729	Potato	cytosol	6.55	13.59
PGSC0003DMT400075949	Potato	cytosol	15.6	11.74
PGSC0003DMT400009219	Potato	plastid	15.47	9.74
PGSC0003DMT400011818	Potato	extracellular, golgi, peroxisome	9.17	9.14

Protein Annotations

Gene3D:1.10.287.130	EntrezGene:102587369	MapMan:11.5.2.1	Gene3D:3.30.450.40	Gene3D:3.30.565.10	Gene3D:3.40.50.2300
InterPro:CheY-like_superfamily	ncoils:Coil	InterPro:ETR	InterPro:GAF	InterPro:GAF-like_dom_sf	GO:GO:0000155
GO:GO:0000160	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004673	GO:GO:0004871
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009873	GO:GO:0009987	GO:GO:0010105
GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0018106
GO:GO:0019538	GO:GO:0023014	GO:GO:0038023	GO:GO:0038199	GO:GO:0046872	GO:GO:0050896
GO:GO:0051740	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:HisK_dim/P	InterPro:HisK_dim/P_sf	InterPro:His_kinase_dom
InterPro:IPR001789	InterPro:IPR005467	InterPro:IPR029016	InterPro:IPR036890	UniProt:M1C5B5	PFAM:PF00072
PFAM:PF01590	PFAM:PF02518	EnsemblPlantsGene:PGSC0003DMG400023402	PGSC:PGSC0003DMG400023402	EnsemblPlants:PGSC0003DMT400060160	PIRSF:PIRSF026389
PFscan:PS50109	PFscan:PS50110	PANTHER:PTHR43719	PANTHER:PTHR43719:SF6	SMART:SM00065	SMART:SM00448
SUPFAM:SSF47384	SUPFAM:SSF52172	SUPFAM:SSF55781	SUPFAM:SSF55874	InterPro:Sig_transdc_resp-reg_receiver	SignalP:SignalP-TM
TMHMM:TMhelix	UniParc:UPI000295716C	RefSeq:XP_006345886.1	:	:	:

Description

Ethylene receptor [Source:PGSC_GENE;Acc:PGSC0003DMG400023402]

Coordinates

chr5:-:50784143..50787511

Molecular Weight (calculated)

85192.1 Da

IEP (calculated)

6.811

GRAVY (calculated)

0.082

Length

763 amino acids

Sequence
(BLAST)

001: MLRWLFVGFL ISLFIISVIA TDNEFSNCNC DEEGVFWSIH TILDCQKVSD FLIAIAYFSI PLELLYFISC SDVPFKWVLV QFIAFIVLCG LTHLLNGLTY
101: STHPSFQLIM SLTVAKILTA LVSCATAITL LTLFPMLLKV KVRELFLTQN VLELDQEVGM MKKQKEVYTH VRMLTHEIRK SLDKHTILYT TLVELSKTLN
201: LQNCAVWMPN ENRSLMNLTH GLSPGAAVEY HRSLPIDDPD VLEITKNKGV RILRQDSVLA SASSGGPGEP CTVAAIRMPL LCASDFKGGT PELVDTRYAI
301: LVLVIPSAND DWSHNEMEIV EVVADQVAVA LSHATVLEES QLMREKLEAR NGLLQQAKEN AVKASQARNS FQKVMNNGMR RPMHSILGLL SILQDENTSS
401: NQKIIIDTMV RTSTVLSNLI NDAMDIPDKD EGRFPVEMMP FQLHSLIREA SCLVKCLCVY KGFGFSTDVP NSLPNLVMGD EKRTFQVILH MVGHLLNISS
501: GRGLVVFKVI LESGTEGGND KLQGARKHSV FDEYATIKFE IEVSRGGSQT DSSISTSHFG GKKYNSKELK EGMSFSMCKK LVQMMQGNVW MPSNTDGHAQ
601: RMTLILRFLK QSSFRKHMFE LVNPLDQAIS SSTFKGLQVL LADDDDVNRM VTKKLLEKLG CQVIAVSSGF QCLSAMGHST TSIQVVVLDL HMPEMDGFEV
701: TTRVRKFHSH SWPLIIALSS TSEEQVWDRC LQVGINGLIR KPVLLQGMAE ELQRVLQRAG EGF

Best Arabidopsis Sequence Match ( AT3G04580.2 )
(BLAST)

001: MLRSLGLGLL LFALLALVSG DNDYVSCNCD DEGFLSVHTI LECQRVSDLL IAIAYFSIPL ELLYFISFSN VPFKWVLVQF IAFIVLCGMT HLLNAWTYYG
101: PHSFQLMLWL TIFKFLTALV SCATAITLLT LIPLLLKWKV RELYLKQNVL ELNEEVGLMK RQKEMSVQVR MLTREIRKSL DKHMILRTTL VELSKILDLQ
201: NSAVWMPNEN RTEMHLTHEL RANPMRSFRV IPINDPDVVQ VRETKVVTIL RKNSVLAVES SGCGGSEEFG PVAAIRMPML HGLNFKGGTP EFVDTPYAIM
301: VLVLPSANSR VWTDKEIEIA EVVADQVAVA ISHASVLEES QLMREKLGIQ NRALLRAKQN AMMASQARNT CQKVMSHGMR RPMHTILGLL SMFQSESMSL
401: DQKIIVDALM KTSTVLSALI NDVIDISPKD NGKSALEVKR FQLHSLIREA ACVAKCLSVY KGYGFEMDVQ TRLPNLVVGD EKRTFQLVMY MLGYILDMTD
501: GGKTVTFRVI CEGTGTSQDK SKRETGMWKS HMSDDSLGVK FEVEINEIQN PPLDGSAMAM RHIPNRRYHS NGIKEGLSLG MCRKLAQMMQ GNIWISPKSH
601: GQTQSMQLVL RFQTRPSIRR SILAGNAPEL QHPNSNSILR GLRITLADDD DVNRTVTKRL LEKLGCEVTA VSSGFECLNA LSNVEMSYRV VILDLQMPEM
701: DGFEVAMKIR KFCGHHWPLI IALTASTEDH VRERCLQMGM NGMIQKPVLL HVMASELRRA LQTASE

Arabidopsis Description

EIN4EIN4 [Source:UniProtKB/TrEMBL;Acc:A0A178VKQ4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.