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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 1
  • mitochondrion 1
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, plasma membrane
MultiLoc:cytosol
Predotar:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU0Hr1G001750.2
HORVU2Hr1G000030.1
HORVU4Hr1G001850.1
HORVU6Hr1G071860.2
HORVU6Hr1G080170.1
HORVU6Hr1G080180.1
HORVU6Hr1G091700.6

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G04310.1 HORVU0Hr1G001750.2 AT1G04310.1 18577522
AT1G04310.1 HORVU2Hr1G000030.1 AT1G04310.1 18577522
AT1G04310.1 HORVU6Hr1G071860.2 AT1G04310.1 18577522
AT1G04310.1 HORVU6Hr1G080170.1 AT1G04310.1 18577522
AT1G04310.1 HORVU6Hr1G080180.1 AT1G04310.1 18577522
AT1G04310.1 HORVU6Hr1G091700.6 AT1G04310.1 18577522
AT3G23150.1 HORVU4Hr1G001850.1 AT5G03730.1 12177468
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6A01G329400.1 Wheat plasma membrane 96.81 24.93
TraesCS6D01G308300.1 Wheat plasma membrane 95.74 24.73
TraesCS6B01G360200.1 Wheat cytosol, endoplasmic reticulum, golgi 94.68 24.45
HORVU6Hr1G045040.2 Barley cytosol 40.96 21.81
HORVU5Hr1G119650.1 Barley endoplasmic reticulum 39.36 20.73
HORVU6Hr1G071860.2 Barley plasma membrane 78.19 20.36
Os07t0259100-01 Rice mitochondrion, plasma membrane 64.89 15.7
CDX86641 Canola endoplasmic reticulum 43.09 13.61
Zm00001d053594_P001 Maize plasma membrane 57.98 13.57
Bra015303.1-P Field mustard endoplasmic reticulum 43.62 13.31
HORVU2Hr1G000030.1 Barley plasma membrane 54.79 13.29
CDY70681 Canola endoplasmic reticulum 43.62 13.29
HORVU0Hr1G001750.2 Barley endoplasmic reticulum 54.79 13.26
CDY67999 Canola plasma membrane 43.62 13.25
EES06508 Sorghum mitochondrion, plasma membrane 57.98 13.18
GSMUA_Achr8P14350_001 Banana endoplasmic reticulum 52.13 12.95
GSMUA_Achr11P... Banana plasma membrane 52.13 12.93
AT1G04310.1 Thale cress endoplasmic reticulum 43.62 12.71
KXG36402 Sorghum plasma membrane 56.38 12.4
Zm00001d021687_P001 Maize plasma membrane 54.79 12.05
HORVU1Hr1G022550.1 Barley cytosol, golgi, plasma membrane 39.89 11.76
VIT_05s0049g00090.t01 Wine grape plasma membrane 47.34 11.65
HORVU5Hr1G000590.2 Barley cytosol, mitochondrion, plastid 40.96 11.49
PGSC0003DMT400073847 Potato plasma membrane 46.81 11.47
Solyc11g006180.1.1 Tomato plasma membrane 46.81 11.47
VIT_14s0081g00630.t01 Wine grape plasma membrane 46.28 11.45
Solyc06g053710.2.1 Tomato plasma membrane 45.74 11.3
PGSC0003DMT400041983 Potato plasma membrane 45.74 11.3
Solyc05g055070.2.1 Tomato plasma membrane 44.68 11.28
PGSC0003DMT400060160 Potato endoplasmic reticulum 45.21 11.14
HORVU6Hr1G091700.6 Barley cytosol, mitochondrion, plasma membrane 47.87 10.95
CDY35503 Canola plasma membrane 45.21 10.91
CDY70443 Canola plasma membrane 45.21 10.9
Bra023756.1-P Field mustard plasma membrane 45.21 10.9
AT3G04580.1 Thale cress plasma membrane 44.15 10.84
Bra040134.1-P Field mustard plasma membrane 44.15 10.84
CDY30004 Canola plasma membrane 44.15 10.84
Solyc09g089610.2.1 Tomato endoplasmic reticulum 42.55 10.61
AT3G23150.1 Thale cress endoplasmic reticulum, plasma membrane 43.62 10.61
PGSC0003DMT400044244 Potato plasma membrane 42.02 10.49
HORVU4Hr1G006260.4 Barley plastid 27.66 8.1
KRH31729 Soybean endoplasmic reticulum 6.38 5.02
Bra030564.1-P Field mustard plasma membrane 43.09 4.81
CDY15498 Canola plasma membrane 43.09 4.74
HORVU4Hr1G008210.4 Barley cytosol 14.89 2.79
HORVU3Hr1G094870.10 Barley plasma membrane 14.89 2.67
HORVU6Hr1G077070.5 Barley mitochondrion 14.89 2.67
HORVU2Hr1G106760.1 Barley cytosol 6.38 1.92
Solyc04g064840.1.1 Tomato endoplasmic reticulum 1.6 1.66
HORVU7Hr1G030040.2 Barley extracellular 1.6 0.29
Solyc12g044870.1.1 Tomato cytosol 0.0 0.0
HORVU6Hr1G080180.1 Barley cytosol 0.0 0.0
Solyc01g014770.1.1 Tomato cytosol 0.0 0.0
Solyc04g025660.1.1 Tomato cytosol 0.0 0.0
Solyc04g049320.1.1 Tomato cytosol, plastid, vacuole 0.0 0.0
CDY21123 Canola cytosol 0.0 0.0
Solyc04g049990.1.1 Tomato cytosol 0.0 0.0
CDY64702 Canola mitochondrion 0.0 0.0
Solyc12g062760.1.1 Tomato cytosol 0.0 0.0
Solyc08g068360.1.1 Tomato cytosol 0.0 0.0
Solyc12g038690.1.1 Tomato cytosol 0.0 0.0
Solyc12g027610.1.1 Tomato cytosol 0.0 0.0
Solyc11g065590.1.1 Tomato cytosol 0.0 0.0
Solyc06g036450.1.1 Tomato cytosol 0.0 0.0
Solyc06g051610.1.1 Tomato cytosol 0.0 0.0
Solyc09g082910.1.1 Tomato cytosol 0.0 0.0
Solyc09g065310.1.1 Tomato cytosol 0.0 0.0
Solyc09g011680.1.1 Tomato cytosol 0.0 0.0
Protein Annotations
MapMan:35.1UniProt:A0A287UV93GO:GO:0000155GO:GO:0000160GO:GO:0003674GO:GO:0003824
GO:GO:0004673GO:GO:0004871GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005783GO:GO:0005789GO:GO:0006464GO:GO:0007154GO:GO:0007165GO:GO:0008150
GO:GO:0008152GO:GO:0009719GO:GO:0009873GO:GO:0009987GO:GO:0016020GO:GO:0016021
GO:GO:0016301GO:GO:0016740GO:GO:0018106GO:GO:0019538GO:GO:0023014GO:GO:0038023
GO:GO:0038199GO:GO:0050896EnsemblPlantsGene:HORVU6Hr1G080170EnsemblPlants:HORVU6Hr1G080170.1PANTHER:PTHR43719PANTHER:PTHR43719:SF20
TMHMM:TMhelixUniParc:UPI000B463BFDSEG:seg:::
Description
No Description!
Coordinates
chrchr6H:+:540211621..540212453
Molecular Weight (calculated)
20405.3 Da
IEP (calculated)
10.655
GRAVY (calculated)
0.483
Length
188 amino acids
Sequence
(BLAST)
001: MARHFAAAAA AVQRYYCGGG CDGRDDGAVQ AMLQCQRVSD FLIAASYLSI PLELLYFASC ADLAPLKWLL LQLAAFAVLG GATHLLAVFS HAHPHSSGLL
101: LASTAAKLLA ALVSFATAVS LVALIPRLIR AKLREAFLRA KARQLDRDLG LIRRRVEATS RLVRMLTHRI RSSPLDAHTI LHTTMLHL
Best Arabidopsis Sequence Match ( AT1G66340.1 )
(BLAST)
001: MEVCNCIEPQ WPADELLMKY QYISDFFIAI AYFSIPLELI YFVKKSAVFP YRWVLVQFGA FIVLCGATHL INLWTFTTHS RTVALVMTTA KVLTAVVSCA
101: TALMLVHIIP DLLSVKTREL FLKNKAAELD REMGLIRTQE ETGRHVRMLT HEIRSTLDRH TILKTTLVEL GRTLALEECA LWMPTRTGLE LQLSYTLRHQ
201: HPVEYTVPIQ LPVINQVFGT SRAVKISPNS PVARLRPVSG KYMLGEVVAV RVPLLHLSNF QINDWPELST KRYALMVLML PSDSARQWHV HELELVEVVA
301: DQVAVALSHA AILEESMRAR DLLMEQNVAL DLARREAETA IRARNDFLAV MNHEMRTPMH AIIALSSLLQ ETELTPEQRL MVETILKSSN LLATLMNDVL
401: DLSRLEDGSL QLELGTFNLH TLFREVLNLI KPIAVVKKLP ITLNLAPDLP EFVVGDEKRL MQIILNIVGN AVKFSKQGSI SVTALVTKSD TRAADFFVVP
501: TGSHFYLRVK VKDSGAGINP QDIPKIFTKF AQTQSLATRS SGGSGLGLAI SKRFVNLMEG NIWIESDGLG KGCTAIFDVK LGISERSNES KQSGIPKVPA
601: IPRHSNFTGL KVLVMDENGV SRMVTKGLLV HLGCEVTTVS SNEECLRVVS HEHKVVFMDV CMPGVENYQI ALRIHEKFTK QRHQRPLLVA LSGNTDKSTK
701: EKCMSFGLDG VLLKPVSLDN IRDVLSDLLE PRVLYEGM
Arabidopsis Description
ETR1Ethylene receptor 1 [Source:UniProtKB/Swiss-Prot;Acc:P49333]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.