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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 6
  • vacuole 5
  • plasma membrane 7
  • golgi 5
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra004160.1-P
Bra015303.1-P
Bra030564.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G04310.1 Bra015303.1-P AT1G04310.1 18577522
AT1G04310.1 Bra030564.1-P AT1G04310.1 18577522
AT1G04310.1 Bra004160.1-P AT1G66340.1 18577522
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY15498 Canola plasma membrane 95.66 94.15
Bra015303.1-P Field mustard endoplasmic reticulum 30.54 83.44
AT1G04310.1 Thale cress endoplasmic reticulum 30.12 78.6
KRG90373 Soybean plasma membrane 16.46 60.61
KRH34517 Soybean plasma membrane 21.69 49.53
KRG92290 Soybean plasma membrane 22.22 49.08
VIT_05s0049g00090.t01 Wine grape plasma membrane 21.93 48.3
Bra023756.1-P Field mustard plasma membrane 21.69 46.79
PGSC0003DMT400041983 Potato plasma membrane 19.96 44.15
Solyc06g053710.2.1 Tomato plasma membrane 19.85 43.89
HORVU6Hr1G080170.1 Barley plasma membrane 4.81 43.09
Bra040134.1-P Field mustard plasma membrane 18.95 41.64
GSMUA_Achr11P... Banana plasma membrane 18.42 40.9
Zm00001d051889_P002 Maize endoplasmic reticulum 18.18 40.58
TraesCS6B01G439600.1 Wheat mitochondrion 18.78 40.31
TraesCS6D01G383600.1 Wheat mitochondrion 18.66 40.05
GSMUA_Achr8P14350_001 Banana endoplasmic reticulum 18.0 40.03
OQU85974 Sorghum plasma membrane 18.36 39.82
TraesCS6A01G399400.2 Wheat mitochondrion, plasma membrane 18.78 39.06
TraesCS2D01G000500.1 Wheat plasma membrane 17.71 38.4
Os04t0169100-02 Rice plasma membrane 17.35 38.27
TraesCS2B01G023800.1 Wheat plasma membrane 17.47 38.23
HORVU6Hr1G091700.6 Barley cytosol, mitochondrion, plasma membrane 18.6 38.08
TraesCS2A01G000200.1 Wheat plasma membrane 17.59 38.05
EES10426 Sorghum plasma membrane 17.41 37.9
PGSC0003DMT400044244 Potato plasma membrane 16.87 37.72
HORVU0Hr1G001750.2 Barley endoplasmic reticulum 17.41 37.71
Zm00001d004372_P003 Maize plasma membrane 17.17 37.53
Solyc09g089610.2.1 Tomato endoplasmic reticulum 16.76 37.4
HORVU2Hr1G000030.1 Barley plasma membrane 17.17 37.29
GSMUA_AchrUn_... Banana endoplasmic reticulum, extracellular, plasma membrane 14.32 36.96
Os02t0820900-03 Rice mitochondrion 18.12 36.48
Zm00001d025050_P001 Maize cytosol, golgi, plasma membrane 17.11 35.82
TraesCS6D01G266200.1 Wheat plasma membrane 14.62 33.88
TraesCS6A01G285800.1 Wheat plasma membrane 14.5 33.52
TraesCS6B01G314600.1 Wheat plasma membrane 14.44 33.33
TraesCS6A01G329400.1 Wheat plasma membrane 14.44 33.29
TraesCS6B01G360200.1 Wheat cytosol, endoplasmic reticulum, golgi 14.26 32.97
TraesCS6D01G308300.1 Wheat plasma membrane 14.26 32.97
HORVU6Hr1G071860.2 Barley plasma membrane 14.08 32.83
Bra004449.1-P Field mustard plasma membrane 11.35 31.26
Os07t0259100-01 Rice mitochondrion, plasma membrane 14.32 31.02
HORVU6Hr1G080180.1 Barley cytosol 9.09 30.42
Bra004160.1-P Field mustard cytosol 13.13 30.03
Zm00001d021687_P001 Maize plasma membrane 13.96 27.49
EES06508 Sorghum mitochondrion, plasma membrane 13.43 27.33
KXG36402 Sorghum plasma membrane 13.84 27.25
Zm00001d053594_P001 Maize plasma membrane 12.83 26.9
KRG90374 Soybean cytosol 3.33 25.0
Bra010698.1-P Field mustard cytosol 2.67 13.64
Bra009011.1-P Field mustard nucleus 6.48 12.14
Bra028573.1-P Field mustard nucleus 6.3 11.64
Bra024849.1-P Field mustard cytosol, peroxisome, plasma membrane 7.07 11.44
Bra006074.1-P Field mustard cytosol 2.55 11.17
Bra006075.1-P Field mustard nucleus 6.18 11.13
Bra030037.1-P Field mustard endoplasmic reticulum, golgi, plasma membrane 6.6 10.91
Bra013186.1-P Field mustard plasma membrane 6.95 10.67
Bra035381.1-P Field mustard cytosol, golgi, plasma membrane 7.25 10.62
Bra032761.1-P Field mustard endoplasmic reticulum, golgi, plasma membrane 4.52 7.31
Bra002095.1-P Field mustard nucleus 5.17 7.29
Protein Annotations
Gene3D:1.10.287.130MapMan:11.5.2.1Gene3D:2.60.210.10MapMan:22.5.1.6Gene3D:3.30.450.40EnsemblPlantsGene:Bra030564
EnsemblPlants:Bra030564.1EnsemblPlants:Bra030564.1-Pncoils:CoilInterPro:GAFInterPro:GAF-like_dom_sfGO:GO:0003674
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:IPR002083
InterPro:IPR008974InterPro:IPR029016UniProt:M4EP44InterPro:MATH/TRAF_domPFAM:PF00917PFAM:PF01590
PFscan:PS50144PANTHER:PTHR45001SMART:SM00061SMART:SM00065SUPFAM:SSF49599SUPFAM:SSF55781
SignalP:SignalP-noTMTMHMM:TMhelixInterPro:TRAF-likeUniParc:UPI00025458A5SEG:seg:
Description
AT1G04300 (E=0.0) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT5G43560.2); Has 15585 Blast hits to 9972 proteins in 679 species: Archae - 16; Bacteria - 1260; Metazoa - 5683; Fungi - 2012; Plants - 671; Viruses - 109; Other Eukaryotes - 5834 (source: NCBI BLink).
Coordinates
chrA08:+:21293166..21301493
Molecular Weight (calculated)
186498.0 Da
IEP (calculated)
7.840
GRAVY (calculated)
-0.421
Length
1683 amino acids
Sequence
(BLAST)
0001: MLKTLLVHGP LLFFFFFLIS SVVAGDENDG GLSICNCDDE DSYFSYEGIL ESQKVGDFLI AVAYFSIPIE LLYFVSRTNV SSPYIWVVCE FIAFIVLCGM
0101: SHLLSGFTYG PHYPWVMTAA TVFKMLTAIV SFLTAISLVT LLPLLLKAKV REFMLSKKTR ELNREVGLIM KQTETSLHVR MLTTKIRTSL DRHTILYTTL
0201: VELSKTLGLK NCAVWIPNEI KTEMNLTHEL NGENVGRGPG GGPSGGPGGF SIPITESDVV RIKRSVEVNM LSAGSALASV TTRGKSGQTV GIRVPMLRVC
0301: NFKGGTPEAI HMCYAILVCV LPLRRSWSYQ ELEIVKVVAD QVAVAISHAV ILEESQLMRE KLAEQNRALQ VARENAMRAN QAKAAFEEMM GDAMRRPVRS
0401: ILELLPLITQ DGVSLPETQK VIVDAMGRTS ELLLHLVNNA GDVASGTHCF SLRSVVKETA CLARCLCLGN GFGFTTDVDR ALPDCVVGDA RKVLQVVLHM
0501: LGGVMNRKVK GNVTFKVVPE RGSSEVVKES QEAAWRQCYS KEYVEVKFGF DVAAEGEESS SSSSSTKFMQ GNVLVVEDGL GLVKSLSVVF RFQLRRSIVS
0601: RGGGYSGETF KTSTPPSTSN GHWRHLKEAL KKNLYWGMTE TVNEDSGVGR SVEASSNGHH SLSGESLSLS KWRSSAQVEN GTPSTSLSYW DTDDDEDHGL
0701: KPSQLFGKHK WKIEKFSEIK KRELRSNYFE AGGYKWYILI YPQGCDVCNH LSLFLCVANH DKLLPGWSHF AQFTIAVVNK DPKKSKFSDT LHRFWKKEHD
0801: WGWKKFMEST KLQDGFIDDS DSLTIEAQVQ VIRERVDRPF RCLHCGYRRE LVRVYLSNVE QSCRRFVEEK RSKLGRLIED KAKWTSFGVF WLGMDQNSRH
0901: RMSREKMDVI LKGIVKHFFI EKEVTSTLVM DSLYSGLKAL EGQSKSKKAR PRSLDAKECP APIVSVDKDM FVLVDDVLLL LERAALEPLP PKENKAPQNR
1001: TKKVTCIEIN VFVLQCKSRM AMMEKSSKIE VAYKEAIALK RQEDLIREEE EEWLAETEQR AKRGAAEREK KSKKKQAKQK RNKNKGKDKK KEEKVTLATH
1101: GKDLEENHHD EEENDSVTEK AQPSAEKTDT LEEVSDISDS VDGSADILHP DLEDGDSSSV HWDADALEIH PPPSEGSSIS ISTPNGIAER KTQSTMDDSS
1201: STCSNDSIRS GVTNGSYKGN MLNFRNQKSP NQGKNQQVKI TSDTRSLVTE PDDDQPKSQN SSSESDWVVV SHIQELESSR NRRPVEKQRN VAQVVVNSVH
1301: MDRPEKKSAA VLSSPRTAAK NPSSLTQTKL EKRSVSNADA VPNKKVMSAT GPPSSSQVSP ASSDSQSQAG GLKADMQKIS APKQPATTTI VTRPFSAPII
1401: PAMRPAPVIV SSSVQPTTSL PRSVSSAGRL GPDSSLRNQQ SYTPQSYKHA IVGNSPGSSS SFNHHPSSHG VVPTTLPSAS YTQTPAYQSS SFPFGQDGSF
1501: RSRSFNSVNM GMNNRYTPAV ASNTSLNHID IETARQQAQS LMTDEFPHLD IINDLLEDEN CSNTVFNGSI FNSQSQLFNS QYSYHGGGSA DLGISGELLS
1601: SGRSRSFGDE GFHYMARGPY AEGLIPTQWQ MANMDLSLLA MRNSNVEDTA SYHHTYNFGL DSTNQSFSSG INGYTEFRPS NGH
Best Arabidopsis Sequence Match ( AT1G04300.1 )
(BLAST)
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL
0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGWSQ FAQFTISVLS QDLKKSKFSD TLHRFWKKEH DWGWKKFMEL PKLKDGFIDE SGCLTIEAKV QVIRERVDRP
0201: FRCLDCGYRR ELVRVYFQNV EQICRRFVEE KRSKLGRLIE DKARWTSFGV FWLGMDQNSR RRMCREKVDV ILKGVVKHFF VEKEVSSTLV MDSLYSGLKA
0301: LEGQTKNMKA RSRLLDAKQL PAPIVSVDKD MFVLVDDVLL LLERAALEPL PPKDEKGRQN RTKDGNDGEE VNKEADERDE RRLTELGRRT VEIFILSHIF
0401: STKIEVAHQE AIALKRQEEL IREEEEAWLA ETEQRAKRGA AEREKKSKKK QAKQKRNKNK GKDKRKEEKV SFATHAKDLE ENQNQNQNDE EEKDSVTEKA
0501: QSSAEKPDTL GDVSDISDSV DGSADILQPD LEDRDSSSVL WDTDALEIHP PSSEGSSRGR GISISTPNGI TEGKSHSTMD DSSSTCSNDS IRSGVTNGSY
0601: QGNSLNFRNQ KSPNKGKNQQ VKAMTDAHSL ASETDDQPST LGTDPKGQNY SSEASNVGES DWVVVSHIQE PEGSRNRIPV GRERKTVQSI VNSVDMDRPK
0701: EKSTAVLSSP RNVAKNPSPL TQTKPEKKSI STADGIPNRK VLATGPPSSS QVVLPSDIQS QTVGLRADMQ KLSAPKQPPA TTISRPSSAP IIPAMRPSPI
0801: TVSSSVQTTT SLPRSVSSAG RLGPDPSLHN QQTYTPQSYK NAIVGNSLGS SSSSFNHHPS SHGVVPTTLP SSSYSQAPTS SYQSSFPYSQ DGLLWTGRSP
0901: SSVNMGMYNN TYSPAVTSNR SLNHMDVQIA QQQAQSMMTD EFPHLDIIND LLEDEQCSNM VYNGSIFNPQ PQVFNGQYSS YHGELLSGGR TRSFGEEGLH
1001: YMARGPYGTD GMMPRQWQMT NMDLSLPAMR SNGMEDGTSS AANYHHSYFG LDASNPSFTS GINGYTEFRP SNGH
Arabidopsis Description
TRAF1BTNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.